Does SNT have inbuilt motion correction?

fiji / SNT

Legacy project superseded by https://github.com/morphonets/SNT

GNU General Public License v3.0

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Does SNT have inbuilt motion correction? #71

Open akatav opened 4 years ago

akatav commented 4 years ago

Dataset consists of multichannel multiframe tiff files.There are n tiff stacks. Each stack has Nimgs where each img is from a depth along the axial plane of the brain, n is the number of channels. Once motion corrected, we are looking to trace the dendrites belonging to a stack in 3d. Does SNT have any inbuilt motion correction within images and between images in a stack?

carshadi commented 4 years ago

Hi @akatav sorry for the late reply. We have been busy migrating SNT to a new organization here. As for your question, I do not believe SNT currently has this functionality, but @tferr would be able to give a definitive answer. However, the StackReg ImageJ plugin seems like it could be relevant, if you have not already found a solution to your problem.