I recently tested, that some cool features of BioFormats regarding reading CZI images lead to issues when using the GridStitching plugin. This unfortunately breaks existing workflows for our users.
In Summary this is caused by the fact the the number of detected image series within a CZI depends from the way Biofomats reads it: Either with or without pyramid levels.
Sebastien Besson already outline the possible solution for this: see bioformats issue above
It would be really cool if that could be adapted soon.
Hi guys,
I recently tested, that some cool features of BioFormats regarding reading CZI images lead to issues when using the GridStitching plugin. This unfortunately breaks existing workflows for our users.
The initial discussion can be found here:
https://github.com/openmicroscopy/bioformats/issues/2898#issuecomment-316063099
In Summary this is caused by the fact the the number of detected image series within a CZI depends from the way Biofomats reads it: Either with or without pyramid levels.
Sebastien Besson already outline the possible solution for this: see bioformats issue above
It would be really cool if that could be adapted soon.
Sebi