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fiji / Stitching

Fiji's Stitching plugins reconstruct big images from tiled input images.
http://imagej.net/Stitching
GNU General Public License v2.0
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Ignoring Z-tile movement in stitching doesn't work #62

Closed derekcxu closed 3 years ago

derekcxu commented 3 years ago

The documentation online details that ignoring z is possible by running the following line in script editor:

mpicbg.stitching.GlobalOptimization.ignoreZ = true;

However, I have found that even when I do this (after setting language to Beanshell, etc, following the instructions), the stitched image still shifts along the z-axis, causing mis-alignment.

I've already contacted Dr. Preibisch who may have already fixed this but asked me to open an issue.

StephanPreibisch commented 3 years ago

Hi @derekcxu, this should be fixed with commit https://github.com/fiji/Stitching/commit/b549d44b28c8f05c63f4dab63037a808caf1faf3

Making a release for Fiji now ...

StephanPreibisch commented 3 years ago

Hi @ctrueden, the release-version.sh script hangs on my computer after pulling the newest version:

../scijava-scripts/release-version.sh 
Version? [3.1.7]: 
Detected DEFAULT version bump

Did something change that I missed, am I doing something wrong? Sorry and thanks so much, Stephan

Update: after about 15-30 min it provided an explanation which is correct, but I wonder why it took so long?

Newer version of parent 'org.scijava:pom-scijava' is available: .
I recommend you update it before releasing.
Or if you know better, try again with --skip-version-check flag.
StephanPreibisch commented 3 years ago

Hi @ctrueden, this was a VPN issue, please never mind ... sorry! Release worked now ...