fiji / bUnwarpJ

ImageJ/Fiji plugin for consistent elastic registration of 2D images
http://imagej.net/BUnwarpJ
GNU General Public License v3.0
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Command line: `-landmarks` option ignored #8

Open DavidPeicho opened 4 years ago

DavidPeicho commented 4 years ago

Hi,

I was trying to run this plugin in command line using:

bUnwarpJ_ -align target.jpg NULL source.jpg NULL 0 2 0 0.1 0.1 0 0 output.tif output_2.tif -landmarks 1 landmarks.txt

And this is the output:

Target image           : target.jpg
Target mask            : NULL
Source image           : source.jpg
Source mask            : NULL
Min. Scale Deformation : 0
Max. Scale Deformation : 2
Max. Subsampling factor: 0
Div. Weight            : 0.1
Curl Weight            : 0.1
Image Weight           : 0.0
Consistency Weight     : 0.0
Output 1               : output.tif
Output 2               : output_2.tif
Landmark Weight        : 0.0
Landmark file          :
Affine matrix file 1   :
Affine matrix file 2   :
Registration mode      : Accurate
Coefficients pyramid 1024x1024
Coefficients pyramid 512x512
Coefficients pyramid 256x256
 Image pyramid 1024x1024
 Image pyramid 512x512
 Image pyramid 256x256

The landmark argument isn't taken into account. Am I missing something here?

Thanks a lot!

-- bUnwrapJ version: 2.6.12 OS: MacOS Catalina

FranceRose commented 2 years ago

Hello there, I have the same problem. Is there any fix please?

Thanks!