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fiji / dockerfiles

Fiji Dockerfiles for Docker builds.
https://registry.hub.docker.com/u/fiji/fiji/
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Docker build shows an error but passes #10

Open joshmoore opened 5 years ago

joshmoore commented 5 years ago

Building openjdk-8:

Downloading... (jars/win64/ffmpeg-2.6.1-0.11-windows-x86_64.jar)
Downloading... 182861221/196480600
Downloading... 183867581/196480600
[ERROR] Error updating
java.net.SocketException: Connection reset
    at java.net.SocketInputStream.read(SocketInputStream.java:210)
    at java.net.SocketInputStream.read(SocketInputStream.java:141)
    at java.io.BufferedInputStream.read1(BufferedInputStream.java:284)
    at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
    at sun.net.www.MeteredStream.read(MeteredStream.java:134)
    at java.io.FilterInputStream.read(FilterInputStream.java:133)
    at sun.net.www.protocol.http.HttpURLConnection$HttpInputStream.read(HttpURLConnection.java:3444)
    at sun.net.www.protocol.http.HttpURLConnection$HttpInputStream.read(HttpURLConnection.java:3437)
    at net.imagej.updater.util.Downloader.download(Downloader.java:128)
    at net.imagej.updater.util.Downloader.start(Downloader.java:98)
    at net.imagej.updater.Installer.start(Installer.java:154)
    at net.imagej.updater.CommandLine.update(CommandLine.java:572)
    at net.imagej.updater.CommandLine.main(CommandLine.java:1456)
    at net.imagej.updater.CommandLine.main(CommandLine.java:1375)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at java.lang.invoke.MethodHandleImpl$BindCaller$T/633079302.invoke_V(MethodHandleImpl.java:1258)
    at jdk.nashorn.internal.scripts.Script$1$bootstrap.:program(bootstrap.js:329)
    at jdk.nashorn.internal.runtime.ScriptFunctionData.invoke(ScriptFunctionData.java:637)
    at jdk.nashorn.internal.runtime.ScriptFunction.invoke(ScriptFunction.java:494)
    at jdk.nashorn.internal.runtime.ScriptRuntime.apply(ScriptRuntime.java:393)
    at jdk.nashorn.api.scripting.NashornScriptEngine.evalImpl(NashornScriptEngine.java:449)
    at jdk.nashorn.api.scripting.NashornScriptEngine.evalImpl(NashornScriptEngine.java:406)
    at jdk.nashorn.api.scripting.NashornScriptEngine.evalImpl(NashornScriptEngine.java:402)
    at jdk.nashorn.api.scripting.NashornScriptEngine.eval(NashornScriptEngine.java:150)
    at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:249)
    at com.sun.tools.script.shell.Main.evaluateReader(Main.java:332)
    at com.sun.tools.script.shell.Main.evaluateStream(Main.java:368)
    at com.sun.tools.script.shell.Main.processSource(Main.java:285)
    at com.sun.tools.script.shell.Main.access$100(Main.java:37)
    at com.sun.tools.script.shell.Main$2.run(Main.java:200)
    at com.sun.tools.script.shell.Main.main(Main.java:48)
Removing intermediate container daeb559d597a
 ---> f9b930333063
Step 5/6 : ENV PATH $PATH:/fiji
 ---> Running in daebc961fa7e
Removing intermediate container daebc961fa7e
 ---> 3073ca9954d5
Step 6/6 : CMD ["fiji-linux64"]
 ---> Running in 8ae4ac1ec07b
Removing intermediate container 8ae4ac1ec07b
 ---> db0ac7ba3fcb
Successfully built db0ac7ba3fcb
Successfully tagged fiji-openjdk-8:latest

Building openjdk-7:

Downloading... (jars/win64/ffmpeg-2.6.1-0.11-windows-x86_64.jar)
jars/win64/ffmpeg-2.6.1-0.11-windows-x86_64.jar done
jars/win64/ffmpeg-2.6.1-0.11-windows-x86_64.jar done
[ERROR] Error updating
java.lang.RuntimeException: Incorrect file size for /fiji/update/jars/win64/ffmpeg-2.6.1-0.11-windows-x86_64.jar: 938 (expected 14494335)
    at net.imagej.updater.Installer.verify(Installer.java:293)
    at net.imagej.updater.Installer$VerifyFiles.itemDone(Installer.java:270)
    at net.imagej.updater.util.AbstractProgressable.itemDone(AbstractProgressable.java:87)
    at net.imagej.updater.util.Downloader.download(Downloader.java:138)
    at net.imagej.updater.util.Downloader.start(Downloader.java:98)
    at net.imagej.updater.Installer.start(Installer.java:154)
    at net.imagej.updater.CommandLine.update(CommandLine.java:572)
    at net.imagej.updater.CommandLine.main(CommandLine.java:1456)
    at net.imagej.updater.CommandLine.main(CommandLine.java:1375)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at sun.org.mozilla.javascript.MemberBox.invoke(MemberBox.java:126)
    at sun.org.mozilla.javascript.NativeJavaMethod.call(NativeJavaMethod.java:225)
    at sun.org.mozilla.javascript.Interpreter.interpretLoop(Interpreter.java:1473)
    at sun.org.mozilla.javascript.Interpreter.interpret(Interpreter.java:815)
    at sun.org.mozilla.javascript.InterpretedFunction.call(InterpretedFunction.java:109)
    at sun.org.mozilla.javascript.ContextFactory.doTopCall(ContextFactory.java:394)
    at com.sun.script.javascript.RhinoScriptEngine$1.superDoTopCall(RhinoScriptEngine.java:116)
    at com.sun.script.javascript.RhinoScriptEngine$1.doTopCall(RhinoScriptEngine.java:109)
    at sun.org.mozilla.javascript.ScriptRuntime.doTopCall(ScriptRuntime.java:3091)
    at sun.org.mozilla.javascript.InterpretedFunction.exec(InterpretedFunction.java:120)
    at sun.org.mozilla.javascript.Context.evaluateReader(Context.java:1110)
    at com.sun.script.javascript.RhinoScriptEngine.eval(RhinoScriptEngine.java:214)
    at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:249)
    at com.sun.tools.script.shell.Main.evaluateReader(Main.java:332)
    at com.sun.tools.script.shell.Main.evaluateStream(Main.java:368)
    at com.sun.tools.script.shell.Main.processSource(Main.java:285)
    at com.sun.tools.script.shell.Main.access$100(Main.java:37)
    at com.sun.tools.script.shell.Main$2.run(Main.java:200)
    at com.sun.tools.script.shell.Main.main(Main.java:48)
Removing intermediate container 0b5ae1a5a5f7
 ---> 0f00e5bcef7a
Step 5/6 : ENV PATH $PATH:/fiji
 ---> Running in d1dfe984941f
Removing intermediate container d1dfe984941f
 ---> 2592eed30a73
Step 6/6 : CMD ["fiji-linux64"]
 ---> Running in 29eb201cb03a
Removing intermediate container 29eb201cb03a
 ---> 1dfc6fbbde56
Successfully built 1dfc6fbbde56
Successfully tagged fiji-openjdk-7:latest