Record macro does not capture it

[FerdinandoPucci]

Hi,

Thank you for developing this, it works great! Unfortunately when trying to implement it in IJ macros using record macro, the recorder does not capture anything. Fixing this or adding a clear documentation of how to use it in IJ macro language would be very appreciated!

Best

[FerdinandoPucci]

Somehow (latest update?) I found the recorder to show the following:run("Register Virtual Stack Slices", "source=[Y:/mIHC/SLN mIHC-Cohort 1/61-P16 pos/Registered_Regions/ROI01/] output=[Y:/mIHC/SLN mIHC-Cohort 1/61-P16 pos/Registered_Regions_RVSS/ROI01/] feature=Similarity registration=[Similarity -- translate + rotate + isotropic scale] advanced initial_gaussian_blur=1.60 steps_per_scale_octave=3 minimum_image_size=64 maximum_image_size=1024000 feature_descriptor_size=8 feature_descriptor_orientation_bins=8 closest/next_closest_ratio=0.92 maximal_alignment_error=25 inlier_ratio=0.05 feature_extraction_model=Similarity registration_model=[Similarity -- translate + rotate + isotropic scale] interpolate");

However, the macro call still cannot pass the reference image filename, which needs to be manually selected from the popup window that appears when running the macro (even in batch mode).

Thank you for making RVSS more macro friendly!

[FerdinandoPucci]

@iarganda please check Mendel fork: https://github.com/rmd13/register_virtual_stack_slices/releases/download/3.0.7.2/register_virtual_stack_slices-3.0.7-recompile.jar It works in passing the ref img to the macro call, however, the overall plugin does not work in the latest fiji version. Thank you!