[DataCap Application] PUBLIC DATA-COVID-19 Genome Sequence Dataset [1/2]

[nora310]

Data Owner Name

National Library of Medicine (NLM)

Data Owner Country/Region

United States

Data Owner Industry

Life Science / Healthcare

Website

https://www.ncbi.nlm.nih.gov/sra/docs/sra-aws-download/

Social Media

twitter-https://twitter.com/NIH_OSP
youtube-https://www.youtube.com/@nihofficeofsciencepolicy3005/videos

Total amount of DataCap being requested

5PiB

Weekly allocation of DataCap requested

1PiB

On-chain address for first allocation

f17ijtonxrc5kdi25fxfrfw7uutyjajkzedglwbky

Data Type of Application

None

Custom multisig

• [ ] Use Custom Multisig

Identifier

No response

Share a brief history of your project and organization

A centralized sequence repository for all records containing sequence associated with the novel corona virus (SARS-CoV-2) submitted to the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA). Included are both the original sequences submitted by the principal investigator as well as SRA-processed sequences that require the SRA Toolkit for analysis. Additionally, submitter provided metadata included in associated BioSample and BioProject records is available alongside NCBI calculated data, such k-mer based taxonomy analysis results, contiguous assemblies (contigs) and associated statistics such as contig length, blast results for the assembled contigs, contig annotation, blast databases of contigs and their annotated peptides, and VCF files generated for each record relative to the SARS-CoV-2 RefSeq record. Finally, metadata is additionally made available in parquet format to facilitate search and filtering using the AWS Athena Service.

Is this project associated with other projects/ecosystem stakeholders?

No

If answered yes, what are the other projects/ecosystem stakeholders

No response

Describe the data being stored onto Filecoin

Genomic sequence reads of SARS-CoV-2 and related coronaviridae, organized by NCBI accession. Files in the sra-src folder are in FASTQ, BAM, or CRAM format (original submission); files in the run folder are in .sra format and require the SRA Toolkit; Metadata for sra-pub-sars-cov2 in an Athena-queryable format.

Where was the data currently stored in this dataset sourced from

AWS Cloud

If you answered "Other" in the previous question, enter the details here

No response

How do you plan to prepare the dataset

IPFS, lotus, singularity

If you answered "other/custom tool" in the previous question, enter the details here

No response

Please share a sample of the data

https://registry.opendata.aws/ncbi-covid-19/

Confirm that this is a public dataset that can be retrieved by anyone on the Network

• [X] I confirm

If you chose not to confirm, what was the reason

No response

What is the expected retrieval frequency for this data

Yearly

For how long do you plan to keep this dataset stored on Filecoin

1.5 to 2 years

In which geographies do you plan on making storage deals

Greater China, Asia other than Greater China, North America, Europe

How will you be distributing your data to storage providers

IPFS, Shipping hard drives

How do you plan to choose storage providers

Slack, Big data exchange

If you answered "Others" in the previous question, what is the tool or platform you plan to use

No response

If you already have a list of storage providers to work with, fill out their names and provider IDs below

No response

How do you plan to make deals to your storage providers

Lotus client, Singularity

If you answered "Others/custom tool" in the previous question, enter the details here

No response

Can you confirm that you will follow the Fil+ guideline

Yes

[large-datacap-requests[bot]]

Thanks for your request! Everything looks good. :ok_hand:

A Governance Team member will review the information provided and contact you back pretty soon.

[large-datacap-requests[bot]]

Thanks for your request! Everything looks good. :ok_hand:

A Governance Team member will review the information provided and contact you back pretty soon.

[Sunnyiscoming]

Datacap Request Trigger

Total DataCap requested

5PiB

Expected weekly DataCap usage rate

1PiB

Client address

f17ijtonxrc5kdi25fxfrfw7uutyjajkzedglwbky

[large-datacap-requests[bot]]

DataCap Allocation requested

Multisig Notary address

f02049625

Client address

f17ijtonxrc5kdi25fxfrfw7uutyjajkzedglwbky

DataCap allocation requested

256TiB

Id

cc1ef9b4-09d7-4c82-93d8-7d41c30cfc27

[filplus-checker-app[bot]]

DataCap and CID Checker Report[^1]

No application info found for this issue on https://filplus.d.interplanetary.one/clients.

[^1]: To manually trigger this report, add a comment with text checker:manualTrigger

[cryptowhizzard]

checker:manualTrigger

[filplus-checker-app[bot]]

DataCap and CID Checker Report[^1]

No active deals found for this client.

[^1]: To manually trigger this report, add a comment with text checker:manualTrigger

[cryptowhizzard]

@OlivierMolenkamp

Can you let us (the community) know what due diligence has been done here for this client? What is the data onboarding plan for this client? Where is he/she going to store the data and who is she? What is their internet capacity? On what bases have you approved this application and why?

[github-actions[bot]]

This application has not seen any responses in the last 14 days, so for now it is being closed. Please feel free to re-open if this is relevant, or start a new application for DataCap anytime. Thank you!

[github-actions[bot]]

This application has not seen any responses in the last 10 days. This issue will be marked with Stale label and will be closed in 4 days. Comment if you want to keep this application open.

[nora310]

Yes!

[github-actions[bot]]

This application has not seen any responses in the last 10 days. This issue will be marked with Stale label and will be closed in 4 days. Comment if you want to keep this application open.

[nora310]

Yes please!

[github-actions[bot]]

This application has not seen any responses in the last 10 days. This issue will be marked with Stale label and will be closed in 4 days. Comment if you want to keep this application open.

[nora310]

Yes please!

[cryptowhizzard]

checker:manualTrigger

[filplus-checker-app[bot]]

DataCap and CID Checker Report Summary[^1]

Retrieval Statistics

• Overall Graphsync retrieval success rate: 0.00%
• Overall HTTP retrieval success rate: 8.81%
• Overall Bitswap retrieval success rate: 0.00%

Storage Provider Distribution

✔️ Storage provider distribution looks healthy.

Deal Data Replication

⚠️ 100.00% of deals are for data replicated across less than 2 storage providers.

Deal Data Shared with other Clients[^3]

✔️ No CID sharing has been observed.

[^1]: To manually trigger this report, add a comment with text checker:manualTrigger

[^2]: Deals from those addresses are combined into this report as they are specified with checker:manualTrigger

[^3]: To manually trigger this report with deals from other related addresses, add a comment with text checker:manualTrigger <other_address_1> <other_address_2> ...

Full report

Click here to view the CID Checker report. Click here to view the Retrieval Dashboard. Click here to view the Retrieval report.

[github-actions[bot]]

This application has not seen any responses in the last 10 days. This issue will be marked with Stale label and will be closed in 4 days. Comment if you want to keep this application open.

[nora310]

Yes please!

[github-actions[bot]]

This application has not seen any responses in the last 10 days. This issue will be marked with Stale label and will be closed in 4 days. Comment if you want to keep this application open.

[github-actions[bot]]

This application has not seen any responses in the last 14 days, so for now it is being closed. Please feel free to contact the Fil+ Gov team to re-open the application if it is still being processed. Thank you!

[clriesco]

Removed stale label and reopened issue :)

[cryptowhizzard]

Dear nora310,

As notary I am doing due diligence on your LDN. I could not get retrieval to work. Can you please upload the car file of CID baga6ea4seaqefjrj43buul4lyctq3256p5r6frtbslu5baxbsz2kmy24baxc6ja ?

You can use our upload system at http://send.datasetcreators.com. Please select 7 days for the system to keep the file and post the link you received here so I (and other notaries) can download your content.

[large-datacap-requests[bot]]

DataCap Allocation requested

Request number 2

Multisig Notary address

f02049625

Client address

f17ijtonxrc5kdi25fxfrfw7uutyjajkzedglwbky

DataCap allocation requested

512TiB

Id

479ddd2f-bc41-4938-9435-1d697e772e8e

[large-datacap-requests[bot]]

Stats & Info for DataCap Allocation

Multisig Notary address

f02049625

Client address

f17ijtonxrc5kdi25fxfrfw7uutyjajkzedglwbky

Rule to calculate the allocation request amount

100% weekly > 0.5PiB, requesting 0.5PiB

DataCap allocation requested

512TiB

Total DataCap granted for client so far

256TiB

Datacap to be granted to reach the total amount requested by the client (5PiB)

4.75PiB

Stats

Number of deals	Number of storage providers	Previous DC Allocated	Top provider	Remaining DC
992	2	256TiB	80.65	194TiB

[github-actions[bot]]

This application has not seen any responses in the last 10 days. This issue will be marked with Stale label and will be closed in 4 days. Comment if you want to keep this application open.

-- Commented by Stale Bot.

[nora310]

Dear nora310,

As notary I am doing due diligence on your LDN. I could not get retrieval to work. Can you please upload the car file of CID baga6ea4seaqefjrj43buul4lyctq3256p5r6frtbslu5baxbsz2kmy24baxc6ja ?

You can use our upload system at http://send.datasetcreators.com. Please select 7 days for the system to keep the file and post the link you received here so I (and other notaries) can download your content.

Can not open this link.

[github-actions[bot]]

This application has not seen any responses in the last 10 days. This issue will be marked with Stale label and will be closed in 4 days. Comment if you want to keep this application open.

-- Commented by Stale Bot.

[nora310]

yes

[github-actions[bot]]

This application has not seen any responses in the last 10 days. This issue will be marked with Stale label and will be closed in 4 days. Comment if you want to keep this application open.

-- Commented by Stale Bot.

[nora310]

yes

[github-actions[bot]]

This application has not seen any responses in the last 10 days. This issue will be marked with Stale label and will be closed in 4 days. Comment if you want to keep this application open.

-- Commented by Stale Bot.

[nora310]

yes

[Sunnyiscoming]

Hello, @nora310 per the https://github.com/filecoin-project/notary-governance/issues/922 for Open, Public Dataset applicants, please complete the following Fil+ registration form to identify yourself as the applicant and also please add the contact information of the SP entities you are working with to store copies of the data.

This information will be reviewed by Fil+ Governance team to confirm validity and then the application will be allowed to move forward for additional notary review.

[nora310]

Hello @Sunnyiscoming , I've finished.

[Wengeding]

Request Proposed

Your Datacap Allocation Request has been proposed by the Notary

Message sent to Filecoin Network

bafy2bzacedea2ulzkraoprqpjutyqw7oxmtu4pwivfxirzyt55n62blo7gbuk

Address

f17ijtonxrc5kdi25fxfrfw7uutyjajkzedglwbky

Datacap Allocated

512.00TiB

Signer Address

f1txfsjmix4vlzido4dkildrnbw26owtlbslexmpa

Id

479ddd2f-bc41-4938-9435-1d697e772e8e

You can check the status of the message here: https://filfox.info/en/message/bafy2bzacedea2ulzkraoprqpjutyqw7oxmtu4pwivfxirzyt55n62blo7gbuk

[MRJAVAZHAO]

Request Approved

Your Datacap Allocation Request has been approved by the Notary

Message sent to Filecoin Network

bafy2bzacealnrxa5kiqrbjjug27jysxs5lh7jku7z5jru7gqiymmoemlokh2m

Address

f17ijtonxrc5kdi25fxfrfw7uutyjajkzedglwbky

Datacap Allocated

512.00TiB

Signer Address

f14gme3f52prtyzk6pblogrdd6b6ivp4swc6qmesi

Id

479ddd2f-bc41-4938-9435-1d697e772e8e

You can check the status of the message here: https://filfox.info/en/message/bafy2bzacealnrxa5kiqrbjjug27jysxs5lh7jku7z5jru7gqiymmoemlokh2m

[MRJAVAZHAO]

SP distribution and data retrieval are ok. Please pay attention to Deal Data Replication. I am willing to support it.

[large-datacap-requests[bot]]

DataCap Allocation requested

Request number 2

Multisig Notary address

f02049625

Client address

f17ijtonxrc5kdi25fxfrfw7uutyjajkzedglwbky

DataCap allocation requested

512TiB

Id

c43a475d-da2c-4043-ae32-5d32b6827acd

[TakiChain]

Request Proposed

Your Datacap Allocation Request has been proposed by the Notary

Message sent to Filecoin Network

bafy2bzacedi6746nzfo5nbdqzxxjd6a3iqtqfhiie7i5yrlwpdjybttbrjskw

Address

f17ijtonxrc5kdi25fxfrfw7uutyjajkzedglwbky

Datacap Allocated

512.00TiB

Signer Address

f15impf3j2zcaex4lhyxndxswuuhv24vzstuqtxsi

Id

c43a475d-da2c-4043-ae32-5d32b6827acd

You can check the status of the message here: https://filfox.info/en/message/bafy2bzacedi6746nzfo5nbdqzxxjd6a3iqtqfhiie7i5yrlwpdjybttbrjskw

[Suyanj]

Request Approved

Your Datacap Allocation Request has been approved by the Notary

Message sent to Filecoin Network

bafy2bzacedjzdqjyc7zznrn3nxhsytpkz5aob2ldghrqe2kxi5ortkn4q6kmm

Address

f17ijtonxrc5kdi25fxfrfw7uutyjajkzedglwbky

Datacap Allocated

512.00TiB

Signer Address

f1ihv7gz3vn3xqvikpt4rwryecgisl7745lodx3yi

Id

c43a475d-da2c-4043-ae32-5d32b6827acd

You can check the status of the message here: https://filfox.info/en/message/bafy2bzacedjzdqjyc7zznrn3nxhsytpkz5aob2ldghrqe2kxi5ortkn4q6kmm

[herrehesse]

checker:manualTrigger

[filplus-checker-app[bot]]

DataCap and CID Checker Report Summary[^1]

Storage Provider Distribution

✔️ Storage provider distribution looks healthy.

Deal Data Replication

✔️ Data replication looks healthy.

Deal Data Shared with other Clients[^3]

✔️ No CID sharing has been observed.

[^1]: To manually trigger this report, add a comment with text checker:manualTrigger

[^2]: Deals from those addresses are combined into this report as they are specified with checker:manualTrigger

[^3]: To manually trigger this report with deals from other related addresses, add a comment with text checker:manualTrigger <other_address_1> <other_address_2> ...

Full report

Click here to view the CID Checker report. Click here to view the Retrieval Dashboard.

[herrehesse]

FULL VPN & Fake distribution. Close @kevzak.

[nora310]

@herrehesse Show your evidence.

[herrehesse]

https://github.com/filecoin-project/filecoin-plus-large-datasets/issues/1881

Evidence same as above. @kevzak please close.

[github-actions[bot]]

This application has not seen any responses in the last 10 days. This issue will be marked with Stale label and will be closed in 4 days. Comment if you want to keep this application open.

-- Commented by Stale Bot.

[nora310]

1881

Evidence same as above. @kevzak please close.

wrong pic. Can not be open.

[ghost]

SP List provided f02207907 | Tim |New York City, New York, US | no | tim f01844118 | Garry | no email here | New York City, New York, US | no | garry f01844232 | Lukas individual | Dallas, Texas, US | no | Lukas f01844043 | Abel | Ashburn, US | no | Abel f01843994 | Hans individual | Dulles Town Center, Virginia, US | no | hans

All emails bounce, closing for lack of validation of distributed location. same as #1881