Hi,
i have run into a Problem while trying to do a genome analysis on Nostoc azollae. I have used Eggnog Mapper to annotate the Genome. Eggnog Mapper uses Prodigal, and it allows for a Start Type or Codon called "Edge" - Basically no Start Codon. This leads Pseudofinder to stop, because my input needs to be fixed.
start_type: The sequence of the start codon (usually ATG, GTG, or TTG). If the gene has no start codon, this field will be labeled "Edge".
Hi, i have run into a Problem while trying to do a genome analysis on Nostoc azollae. I have used Eggnog Mapper to annotate the Genome. Eggnog Mapper uses Prodigal, and it allows for a Start Type or Codon called "Edge" - Basically no Start Codon. This leads Pseudofinder to stop, because my input needs to be fixed.
start_type: The sequence of the start codon (usually ATG, GTG, or TTG). If the gene has no start codon, this field will be labeled "Edge".Is there a way to run Pseudofinder anyway?