finnlennartsson / kpum_noddi

repo for processing of DKI/NODDI data for preterm project at KPUM
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Install AMICO on WSL #30

Closed finnlennartsson closed 1 year ago

finnlennartsson commented 1 year ago

Trying to install AMICO following installation instructions.

Requires DIPY and AMICO fits the models to the data using the SPArse Modeling Software (SPAMS).

finnlennartsson commented 1 year ago

However, running into problems.

Seems to be a problem with installing SPArse Modeling Software (SPAMS).

finnlennartsson commented 1 year ago

Seems like I should follow instructions on https://gitlab.inria.fr/thoth/spams-python

finnlennartsson commented 1 year ago

So, for SPAMS, first

sudo apt-get -y install libblas-dev liblapack-dev gfortran

and then

pip install spams
finnlennartsson commented 1 year ago

Then for AMICO

 pip install dmri-amico -U