search

finnlennartsson / kpum_noddi

repo for processing of DKI/NODDI data for preterm project at KPUM
0 stars 0 forks source link

Implement tensor estimation of only 2 shells - b0 and b1000 #6

Closed finnlennartsson closed 1 year ago

finnlennartsson commented 1 year ago

According to #5 it is better not to use multiple shells when estimating the tensor. So only use b0 and b1000.

This can be implemented in https://github.com/finnlennartsson/kpum_noddi/blob/fcb31888c15ebe662da77da914419c8e4464b464/scripts/dmri_preprocess.sh#L368-L369 by extracting and pipeing only b0 and b1000 into dwi2tensor

finnlennartsson commented 1 year ago

This is now implemented in https://github.com/finnlennartsson/kpum_noddi/blob/2c125adae8ad4a6afb1d017193847a314cd8929a/shell/dmri_dtidki.sh#L109-L110