Set spot detection threshold based on signal:background

fish-quant / big-fish

Toolbox for the analysis of smFISH images.

https://big-fish.readthedocs.io/en/stable/

BSD 3-Clause "New" or "Revised" License

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Set spot detection threshold based on signal:background #46

Open jstitlow opened 3 years ago

jstitlow commented 3 years ago

Is this already possible? Would be very helpful! j

muellerflorian commented 3 years ago

what exactly do you mean by this? calculating the SNR for a range of detection thresholds? the user would then decide based on this SNR ? or do you envision an automated way of doing this?