Implementing new spot detection techniques

fish-quant / big-fish

Toolbox for the analysis of smFISH images.

https://big-fish.readthedocs.io/en/stable/

BSD 3-Clause "New" or "Revised" License

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Open Henley13 opened 1 year ago

Henley13 commented 1 year ago

Should we consider the implementation of alternative spot detection techniques? Especially one based on learning method?

See for example LodeSTAR, with a benchmark here.

muellerflorian commented 1 year ago

Hello, having alternative spot detection methods is currently an interesting idea. Might be interesting to test them on some of our data as well?