fish-quant / fq-imjoy

ImJoy plugins to run different smFISH analysis in a user-friendly setting.
https://fq-imjoy.readthedocs.io/en/latest/
MIT License
2 stars 2 forks source link

ROOT folder and SUB folder forward slash default? #53

Open zentco opened 2 years ago

zentco commented 2 years ago

Hello, I feel like I'm missing something obvious. I have downloaded the demo data from Dropbox making sure I have the recommended folder structure of acquisition and analysis. My goal is to test my scan connection using the demo data images. I have saved those folders in C:\Users\Colin\fq-imjoy-demo. However, as directed in the screenshot in the "Typical workflow" explanation, I have ROOT folder = "C:\Users\Colin\fq-imjoy-demo". SUB folder Acquisition = "acquisition" and SUB folder Analysis = "analysis". I completed the channels information and clicked the scanned folder button.

I receive this message. "Specified data path does not EXIST. No images found. C:\Users\Colin\fq-imjoy-demo/acquisition" When the paths merged, it defaults a forward slash not backslash, which I am guessing why it cannot find this path on my local machine. I assumed I could load images from my local machine. Am I missing some setting to create a backslash? The walkthrough example is ROOT folder = "C:\Users\muell\fq-imjoy-tutorial" which is what I was following.

muellerflorian commented 2 years ago

Hello, I'm really sorry for the super late reply. Just had time to come back to this issue, and had to find a windows machine to make sure I can do proper testing. You don't need to take care of the backlash, that should be taken care of by the plugin.

Unfortunately, I can't reproduce this error so far. Sorry to ask, but what I saw on my system, after unpacking the zip, I actually get this folder, which contains both acquisition and analysis

D:\Downloads\fq-imjoy-demo\fq-imjoy-demo

So, fq-imjoy-demo shows up twice, in the interface, I will need to specify D:\Downloads\fq-imjoy-demo\fq-imjoy-demo and not D:\Downloads\fq-imjoy-demo as the root path.