fish-quant fq-segmentation issues

fish-quant / fq-segmentation

Wrapper code for segmentation of cells and nuclei with Cellpose.

https://fq-segmentation.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

2 stars 2 forks source link

issues

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Upgrade cellpose 1

#33 muellerflorian opened 1 year ago
0
masks, flows and summary plots saved with suffix rather than prefix.

#32 muellerflorian closed 3 years ago
0
Upgrade to be compatible with CellPose 0.6

#31 muellerflorian closed 3 years ago
0
Add focus projection

#30 muellerflorian opened 3 years ago
1
cosmetic changes

#29 muellerflorian closed 3 years ago
0
Some improvements on documentation

#28 muellerflorian closed 3 years ago
0
Improvements

#27 muellerflorian closed 3 years ago
0
Change docs theme to readthedocs

#26 muellerflorian closed 3 years ago
0
Upgrade to latest cellpose version

#25 muellerflorian closed 3 years ago
0
Use latest version of Cellpose

#24 muellerflorian closed 3 years ago
1
Reorganize documentation, improve api log of plugins

#23 muellerflorian closed 3 years ago
0
Check if images to be segmented are 2D (and not 3D)

#22 muellerflorian closed 3 years ago
1
Provide visual outputs of segmentation results directly in ImJoy

#21 muellerflorian opened 3 years ago
0
Clean up setup and requirements, add version output for plugins

#20 muellerflorian closed 3 years ago
0
SegmentCellsNuclei resize issues

#19 jbernitz closed 3 years ago
4
Small improvements

#18 muellerflorian closed 3 years ago
0
Define resizing factor rather than new image

#17 muellerflorian closed 3 years ago
1
Save segmentation settings

#16 muellerflorian closed 3 years ago
1
Corrected bug when no resizing specified

#15 muellerflorian closed 4 years ago
0
Collection of smaller improvements on docs and plugins

#14 muellerflorian closed 4 years ago
0
Improvements and bug fixes after cellpose upgrade

#13 muellerflorian closed 4 years ago
0
consider general case of keeping >> in replacement string

#12 muellerflorian closed 4 years ago
0
small improvements in behavior and docs

#11 muellerflorian closed 4 years ago
0
Small improvements

#10 muellerflorian closed 4 years ago
0
Small improvements

#9 muellerflorian closed 4 years ago
0
Various small improvements and bug fixes

#8 muellerflorian closed 4 years ago
0
Distance maps

#7 muellerflorian closed 4 years ago
0
Update tools.md

#6 muellerflorian closed 4 years ago
0
Corrected bugs in recursive search i preprocessing and segmentation

#5 muellerflorian closed 4 years ago
0
Segment nuclei

#4 muellerflorian closed 4 years ago
0
Add jupyter notebooks

#3 muellerflorian closed 4 years ago
0
Prepare initial release

#2 muellerflorian closed 4 years ago
0
Preparing first release

#1 muellerflorian closed 4 years ago
0