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fitzgerald-lab / ecAssemble

A tool to generate long read assemblies of extra-chromosomal DNA
GNU General Public License v3.0
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ERROR : ‘NoneType’ object is not iterable #1

Open wstang2023 opened 1 month ago

wstang2023 commented 1 month ago
  1. Hi, I have encountered an error message stating, ‘ERROR - ERROR : ‘NoneType’ object is not iterable’, regardless of whether I am running the demo data or my own data. Could you please explain what this error means?
  2. How can I assemble ecDNA across multiple chromosomes? I tried providing multiple regions to the --region_list parameter, separated by commas. However, it seems that the tool can only recognize the last region. Could you please provide some guidance on this? Thank you very much!
alvinwt commented 1 month ago

Hi @wstang2023 , can you try to pull and try running the test cases and your sample as well again? Thanks

wstang2023 commented 1 month ago

Hi @wstang2023 , can you try to pull and try running the test cases and your sample as well again? Thanks

Thanks It works well now