This requires that users tar their dicom directory before calling the cis-processing pipeline, but will integrate better with the cis-xget pipeline, once that's completed and the DMZ is set up.
Changes proposed:
Replace dicom_dir argument with tar_file argument.
Rename run.py to cis_proc.py.
Rename bidsifier/run.py to bidsifier/bidsify.py.
Specify bids-validator version in bidsifier Dockerfile.
Move bidsifier/ contents into cis-bidsify repository.
tsalo
commented
6 years ago
This requires that users tar their dicom directory before calling the cis-processing pipeline, but will integrate better with the
cis-xgetpipeline, once that's completed and the DMZ is set up.Changes proposed:
dicom_dirargument withtar_fileargument.run.pytocis_proc.py.bidsifier/run.pytobidsifier/bidsify.py.bids-validatorversion inbidsifierDockerfile.bidsifier/contents intocis-bidsifyrepository.