[DOC, REF] Simplify code and improve README

fiuneuro / cis-processing

Automated transfer, conversion, and processing of data acquired at the FIU Center for Imaging Science.

Apache License 2.0

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[DOC, REF] Simplify code and improve README #53

Closed tsalo closed 4 years ago

tsalo commented 4 years ago

Closes #52.

Changes proposed:

Add information about related software to README.
Consolidate run functions (currently duplicated across multiple files) in new utils module.
Move anon_acqtimes out of cis-processing and into new bidsutils repository.
Convert example LSF job to SLURM.

tsalo commented 4 years ago

I'd prefer to push some of the modularization work (e.g., with MRIQC) to a later PR, and pathlib seems to have changed substantially across Python versions so we shouldn't use that within this repo. Other than that, I think the review has been addressed.