search

fiuneuro / cis-processing

Automated transfer, conversion, and processing of data acquired at the FIU Center for Imaging Science.
Apache License 2.0
4 stars 4 forks source link

Add datalad option #63

Closed tsalo closed 4 years ago

tsalo commented 4 years ago

While it would be too difficult (and maybe impossible) to run heudiconv with the --datalad option and then merge the resulting git/git-annex, it would be relatively easy to run datalad save -m 'Add sub-X/ses-Y' after the merge-datasets step.

We can just add a --datalad argument and reference the datalad Singularity image I have installed.

tsalo commented 4 years ago

Based on the simplification proposal, we're actually using heudiconv's datalad option, since we'll be writing out to the final directory instead of scratch.