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fizzfizz / binbase

Automatically exported from code.google.com/p/binbase
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alculation speed slows down drastically over time #6

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
that the calculation speed slows down seems to be directly related to the set 
locking timeout. We should monitor this a bit more.

Easiest fix might be to set the locking timeout static or at least disable the 
auto update feature

Original issue reported on code.google.com by berlinguyinca on 3 Jul 2012 at 10:53

GoogleCodeExporter commented 8 years ago 
seems to be fixed

Original comment by berlinguyinca on 20 Jul 2012 at 7:19

GoogleCodeExporter commented 8 years ago 
there seems to be a long wait time during the openening of the jms session at 
the JMSQueueProvider util, which can be easily 20-30 minutes. This seems to be 
part of the issue.

Original comment by berlinguyinca on 26 Jul 2012 at 6:11

GoogleCodeExporter commented 8 years ago 
seems to be related to the delete bin function:

[18:11:23,207] [INFO ] [post matching: 120825amssa08_1/98629] 
[edu.ucdavis.genomics.metabolomics.binbase.algorythm.Import.SingleThreadClassImp
orter] [deleting wrongly generated bins]

Original comment by berlinguyinca on 20 Sep 2012 at 1:28

GoogleCodeExporter commented 8 years ago 
fixed, it was the similarity matrix generation

Original comment by berlinguyinca on 20 Sep 2012 at 7:59