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fjug / MoMA

MoMA - the MotherMachine Analyzer
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Record runtime parameters in output file(s). #26

Open erikvannimwegen opened 8 years ago

erikvannimwegen commented 8 years ago

Right now it seems that the way MoMA was run (i.e command-line argument and parameter file settings) are not displayed in the results file (i.e. neither in the exported cell stats nor in the user curation file). As a general rule, bioinformatics software that I wrote always starts the results file by simply pasting the command line and parameters that were used to obtain those results. Might be helpful to add this.

fjug commented 8 years ago

Would it be a good solution if we copy the used properties files into the export folder?

erikvannimwegen commented 8 years ago

It is not totally clear to us that this addresses the issue. Isn't it the case that the properties in MoMA can be a combination of stuff coming from the properties file + command line arguments. The file that is exported should of course contain the properties that MoMA actually used, and not just a copy of another file.

fjug commented 7 years ago

Solution we agreed upon: export saves mmprops next to other exported data. This makes is super easy to reproduce exactly this exported dataset by simply using the saves mmprops as user properties.

julou commented 7 years ago

implemented. before closing, could you please rename the file so that it incorporates the dataset basename?