pantagruel_pipeline_00_fetch_data.sh

flass / pantagruel

a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome

GNU General Public License v3.0

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pantagruel_pipeline_00_fetch_data.sh #20

Closed samlipworth closed 4 years ago

samlipworth commented 4 years ago

/home/sam/pantagruel_pipeline/pantagruel/scripts/pipeline/pantagruel_pipeline_00_fetch_data.sh: line 356: unexpected EOF while looking for matching `'' /home/sam/pantagruel_pipeline/pantagruel/scripts/pipeline/pantagruel_pipeline_00_fetch_data.sh: line 359: syntax error: unexpected end of file

fixed by closing the quotations in the grep command

flass commented 4 years ago

Hi Sam,

thanks for reporting. This was fixed in the subsequent commit 0c77f87 ; the fix should already be integrated if you use the last version.

samlipworth commented 4 years ago

Ah ok thanks - I recloned and started again yesterday so not sure how I didn't end up with the latest version.