Closed ElitaJaun closed 5 years ago
OK this is due to a small bug introduced in previous commit 3be7cea to fix installation of Interproscan. This should be fixed with commit 5021d45. Please let me know.
Thank you - the java error has disappeared, I thought id better install it all again and Java error disappeared, but I now getting the following:
pantagruel_pipeline/pantagruel/install_dependencies.sh: line 212: interproscan: command not found get Interproscan 5.33-72.0 found InterProScan executable: /home/elita/pantagruel_pipeline/interproscan-5.33-72.0/interproscan.sh 22/02/2019 14:54:01:936 Welcome to InterProScan-5.33-72.0 usage: java -XX:+UseParallelGC -XX:ParallelGCThreads=2 -XX:+AggressiveOpts -XX:+UseFastAccessorMethods -Xms128M -Xmx2048M -jar interproscan-5.jar
then all option for analyses and it ends with this ERROR: Interproscan test was not successful
Do I need to do anything about this?
this was a bug in the installation script. This is fixed with commit 99deaa4.
Hi Florent,
Seem that Java version needs updating to run with InterProScan. Would you please be able to help out with this?
I get the following message:
pantagruel_pipeline/pantagruel/install_dependencies.sh: line 248: [: too many arguments Java version 1.8 is required to run InterProScan. Detected version 10.0 Please install the correct version. ERROR: Interproscan test was not successful