Closed megaptera-helvetiae closed 4 years ago
Hi Laetitia,
yes you need LSD installed, but the software you mention above is not at all the one I mean (it is a fairly common acronym).
LSD, the one developed by O. Gascuel et al. for ultrametrisation of a phylogenetic tree, should already be installed through the execution of Pantagruel's install_dependencies.sh
script.
If you want to install it manually, you can refer to the content of said script to see what needs to be done:
(assuming that $SOFTWARE
is where you mean to install you third-parrty software, and $BINS
is a folder listed in your $PATH
so that executables in there will be available in the command line).
cd ${SOFTWARE}/
wget https://github.com/tothuhien/lsd-0.3beta/releases/download/v0.3.3/lsd_unix
chmod +x ${SOFTWARE}/lsd_unix
ln -s ${SOFTWARE}/lsd_unix ${BINS}/lsd
Hola Florent!
I tried to install lsd on our server but failed because I cannot use 'sudo'
It seems I need lsd. I would prefer doing all the steps of the pipeline on our server. Is there a way around it?
https://github.com/Peltoche/lsd
Here is my error: