Uninstalling old version takes every installed application with it

[zocker-160]

I am not sure if this here is the right place to report this, but this started to happen just a few days ago and I have not updated flatpak itself.

In the past manually uninstalling an old version of this module was no problem, but now it suddenly behaves differently:

$ flatpak list | grep nvidia
nvidia-535-171-04       org.freedesktop.Platform.GL.nvidia-535-171-04           1.4     flathub system
nvidia-535-183-01       org.freedesktop.Platform.GL.nvidia-535-183-01           1.4     flathub system
nvidia-535-171-04       org.freedesktop.Platform.GL32.nvidia-535-171-04         1.4     flathub system
nvidia-535-183-01       org.freedesktop.Platform.GL32.nvidia-535-183-01         1.4     flathub system

$ flatpak uninstall org.freedesktop.Platform.GL.nvidia-535-171-04
Info: applications using the extension org.freedesktop.Platform.GL.nvidia-535-171-04 branch 1.4:
   com.kolor.AutopanoPro, com.poweriso.PowerISO, com.umlet.Umlet, com.icons8.Lunacy, com.xnview.XnConvert, com.xnview.XnViewMP, fi.skyjake.Lagrange, io.freetubeapp.FreeTube, io.gitlab.librewolf-community, net.cozic.joplin_desktop, net.werwolv.ImHex, org.ardour.Ardour, org.filezillaproject.Filezilla, org.winehq.Wine, us.zoom.Zoom, org.codeblocks.codeblocks, org.flatpak.Builder, org.ghidra_sre.Ghidra, edu.berkeley.BOINC, com.teamspeak.TeamSpeak, de.haeckerfelix.Shortwave, engineer.atlas.Nyxt, io.github.jliljebl.Flowblade, org.audacityteam.Audacity, org.gnome.World.PikaBackup, com.github.afrantzis.Bless, com.github.tchx84.Flatseal, com.github.xournalpp.xournalpp, com.leinardi.gwe, fr.handbrake.ghb, im.dino.Dino, io.dbeaver.DBeaverCommunity, org.gimp.GIMP, org.inkscape.Inkscape, org.remmina.Remmina, com.github._4lex4.ScanTailor-Advanced, com.github.zocker_160.SyncThingy, com.makemkv.MakeMKV, info.mumble.Mumble, org.avidemux.Avidemux, org.freecadweb.FreeCAD, org.getmonero.Monero, org.kde.SymbolEditor, org.kde.labplot2, org.keepassxc.KeePassXC, org.videolan.VLC, com.obsproject.Studio, ch.openboard.OpenBoard, com.moonlight_stream.Moonlight, net.davidotek.pupgui2, org.kde.kdenlive, org.rncbc.qtractor, org.texstudio.TeXstudio
Really remove? [y/n]: n

Wny idea why this is happening and how I am supposed to remove old versions?

[guihkx]

That's just a warning (kind of a misleading one, too), but choosing "yes" will not automatically remove any of these apps.

[zocker-160]

oh wow you are right, I did not think of that, it looks so scary I thought it wants to remove everything.

Sorry for the noise, this is something for flatpak cli then.