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flatironinstitute / CaImAn-MATLAB

Complete Matlab pipeline for large scale calcium imaging data analysis
GNU General Public License v2.0
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Question regarding the hard-coded 65x65 search frame #100

Closed wenxuanliang closed 5 years ago

wenxuanliang commented 5 years ago

Please note that the developer of this package is on leave until January 2019 and might not be able to support you.

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In line 68-74 of determine_search_location.m, the region of interest is limited to a 65x65 square centering at the center of mass (CoM) of the initilized spatial component. When working on dendritic data, sometimes a dendrite can extend across the entire patch, where the CoM-centered 65x65 square might not contain the dendrite.

epnev commented 5 years ago

@wenxuanliang Thanks for this observation. I just updated the code to explore the full FOV 9e524e29f17d35db3c79a87de32209c7dccda186