Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
This should fix the problems with loading avi in Windows. It cleans up the logic of the pims fallback branch (thanks Pat), and I worked on the subindixing bits in pims, which was also neglected. Main change is fix to caiman_.base.movies.load() and .load_iter() methods (the later is used in online methods)
Fixes #1137 #883
Type of change
[X] Bug fix (non-breaking change which fixes an issue)
Description
This should fix the problems with loading avi in Windows. It cleans up the logic of the pims fallback branch (thanks Pat), and I worked on the subindixing bits in pims, which was also neglected. Main change is fix to
caiman_.base.movies.load()and.load_iter()methods (the later is used in online methods)Fixes #1137 #883
Type of change
Introduces no new problems with tests.
Ran tests in pims_load_testing.py
Now the cnmfe online demo notebook runs (
demo_online_cnmfE.ipynb). It would be good if someone tests on linux/mac.