flatironinstitute / CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
https://caiman.readthedocs.io
GNU General Public License v2.0
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Demo Notebook for onACID #1411

Closed raymondwjang closed 1 month ago

raymondwjang commented 1 month ago

Hello,

just about to begin trying OnACID package out, but I cannot tell which demo corresponds to the onACID one based on the notebook names.

Could somebody tell me what the difference betweendemo_realtime_cnmfE.ipynb and demo_online_cnmfE.ipynb is?

pgunn commented 1 month ago

Hello, Both of them demonstrate online processing. demo_online_cnmfE is a simpler demo that you'll probably want to start with to learn the online flow, unless you have reason to do otherwise. demo_realtime additionally demonstrates the ring_cnn component, and shows you more options to process the data that you might consider; you might consider using its approaches after you're comfortable with demo_online_cnmfE.

Cheers, Pat

kushalkolar commented 1 month ago

The demo notebooks give some overview, but if your usecase is to integrate it with realtime experiments I suggest looking at the caiman demos with improv: https://github.com/project-improv/improv

raymondwjang commented 1 month ago

That clarifies. Thank you, @pgunn and @kushalkolar !