Is DeepFRI no longer being updated or supported?

flatironinstitute / DeepFRI

Deep functional residue identification

BSD 3-Clause "New" or "Revised" License

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Is DeepFRI no longer being updated or supported? #24

Open DaRinker opened 2 years ago

DaRinker commented 2 years ago

Am interested in using DeepFRI in a new pipeline I'm writing, but am concerned (based upon the number and age of unaddressed Issues here) that DeepFRI is no longer supported.

anar-rzayev commented 2 years ago

I think it is working in general, with some minor issues with the structural representations in GCNs. Which parts are you most interested in, as I have been doing experiments with DeppFRI for some time?

DaRinker commented 2 years ago

Basically I want to incorporate DeepFRI into an structure-based, gene annotation pipeline. However, without any confidence that it will be supported in future, I'm nervous about investing the effort...

tkosciol commented 1 year ago

afaik the main developer is no longer actively involved in the project but we, as co-authors, plan on maintaining deepFRI independently. in fact, we already have a pipeline for gene annotation which you might find interesting: https://github.com/bioinf-mcb/metagenome_assembly future deepFRI releases would come from the BIOINF-MCB orgaznization