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flatironinstitute / NoRMCorre

Matlab routines for online non-rigid motion correction of calcium imaging data
GNU General Public License v2.0
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python implementation #27

Closed bendichter closed 5 years ago

bendichter commented 5 years ago

Hey all,

I am planning on starting a python implementation of this package here. Let me know if you would like to contribute!

bendichter commented 5 years ago

I am also open to changing the location of this repo for better cohesiveness of the calcium imaging processing pipeline tools.

epnev commented 5 years ago

@bendichter Even though there is no consistency with respect to function names and notation, most of NoRMCorre's functionality is present in the motion correction module of CaImAn, so it would be good to avoid replicating this. We can talk about what you want to do and what is missing.

bendichter commented 5 years ago

@epnev OK that sounds good. Essentially we need to NoRMCorre algorithm to work for 3D data. Is that currently possible using the motion correction module?

epnev commented 5 years ago

@bendichter No, that's not currently possible. I'm closing this issue and will open a new one in the CaImAn repo to outline what is there already and what needs to be done.

bendichter commented 5 years ago

Sounds good, thanks @epnev!