flatironinstitute / SkellySim

Hydrodynamic Cytoskeleton Simulator
https://users.flatironinstitute.org/~rblackwell/py-skellysim
Apache License 2.0
23 stars 2 forks source link

Fiber collision fix #28

Closed cedelmaier closed 1 year ago

cedelmaier commented 1 year ago

Fiber collision detection at fiber minus ends was not checked correctly. Old code had persisted where the check was still done with the collocation point at the minus end, even when the minus end was clamped. This caused the collision detection at the periphery to trigger much more often than it should have. Extra code has now been deleted.

Also added a newer, working version of SkellySim installation instructions into the notes directory. Should use this going forward, and start updating the tutorials and examples, so that it is more consistent.