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flatironinstitute / deepblast

Neural Networks for Protein Sequence Alignment
BSD 3-Clause "New" or "Revised" License
114 stars 21 forks source link

Smith waterman #114

Closed blackwer closed 1 year ago

blackwer commented 1 year ago

Based on my numba-fixes branch, so has the same conflicts with master. Happy to fix this once that is merged, or you can just merge this one.

mortonjt commented 1 year ago

Thanks @blackwer I've confirmed that the tests are passing -- I'll be merging this in shortly.

blackwer commented 1 year ago

decodes weren't working when i tested this with test_sw.py and test_sw_cuda.py