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flatironinstitute / deepblast

Neural Networks for Protein Sequence Alignment
BSD 3-Clause "New" or "Revised" License
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Bump mpmath from 1.2.1 to 1.3.0 in /ci #133

Open dependabot[bot] opened 1 year ago

dependabot[bot] commented 1 year ago

Bumps mpmath from 1.2.1 to 1.3.0.

Release notes

Sourced from mpmath's releases.

1.3.0

Security issues:

  • Fixed ReDOS vulnerability in mpmathify() (CVE-2021-29063) (Vinzent Steinberg)

Features:

  • Added quadsubdiv() for numerical integration with adaptive path splitting (Fredrik Johansson)
  • Added the Cohen algorithm for inverse Laplace transforms (Guillermo Navas-Palencia)
  • Some speedup of matrix multiplication (Fredrik Johansson)
  • Optimizations to Carlson elliptic integrals (Paul Masson)
  • Added signal functions (squarew(), trianglew(), sawtoothw(), unit_triangle() sigmoidw()) (Nike Dattani, Deyan Mihaylov, Tina Yu)

Bug fixes:

  • Correct mpf initialization from tuple for finf and fninf (Sergey B Kirpichev)
  • Support QR decomposition for matrices of width 0 and 1 (Clemens Hofreither)
  • Fixed some cases where elliprj() gave inaccurate results (Fredrik Johansson)
  • Fixed cases where digamma() hangs for complex input (Fredrik Johansson)
  • Fixed cases of polylog() with integer-valued parameter with complex type (Fredrik Johansson)
  • Fixed fp.nsum() with Euler-Maclaurin algorithm (Fredrik Johansson)

Maintenance:

  • Dropped support for Python 3.4 (Sergey B Kirpichev)
  • Documentation cleanup (Sergey B Kirpichev)
  • Removed obsolete files (Sergey B Kirpichev)
  • Added options to runtests.py to skip tests and exit on failure (Jonathan Warner)
Changelog

Sourced from mpmath's changelog.

--1.3.0-- Released March 7, 2023

Security issues:

  • Fixed ReDOS vulnerability in mpmathify() (CVE-2021-29063) (Vinzent Steinberg)

Features:

  • Added quadsubdiv() for numerical integration with adaptive path splitting (Fredrik Johansson)
  • Added the Cohen algorithm for inverse Laplace transforms (Guillermo Navas-Palencia)
  • Some speedup of matrix multiplication (Fredrik Johansson)
  • Optimizations to Carlson elliptic integrals (Paul Masson)
  • Added signal functions (squarew(), trianglew(), sawtoothw(), unit_triangle() sigmoidw()) (Nike Dattani, Deyan Mihaylov, Tina Yu)

Bug fixes:

  • Correct mpf initialization from tuple for finf and fninf (Sergey B Kirpichev)
  • Support QR decomposition for matrices of width 0 and 1 (Clemens Hofreither)
  • Fixed some cases where elliprj() gave inaccurate results (Fredrik Johansson)
  • Fixed cases where digamma() hangs for complex input (Fredrik Johansson)
  • Fixed cases of polylog() with integer-valued parameter with complex type (Fredrik Johansson)
  • Fixed fp.nsum() with Euler-Maclaurin algorithm (Fredrik Johansson)

Maintenance:

  • Dropped support for Python 3.4 (Sergey B Kirpichev)
  • Documentation cleanup (Sergey B Kirpichev)
  • Removed obsolete files (Sergey B Kirpichev)
  • Added options to runtests.py to skip tests and exit on failure (Jonathan Warner)

--1.2.0-- Released February 1, 2021

Features and optimizations:

  • Support @ operator for matrix multiplication (Max Gaukler)
  • Add eta() implementing the Dedekind eta function
  • Optimized the python_trailing function (adhoc-king)
  • Implement unary plus for matrices (Max Gaukler)
  • Improved calculation of gram_index (p15-git-acc)

Compatibility:

... (truncated)

Commits
  • b5c0450 version 1.3.0
  • a27581c Merge pull request #656 from cclauss/patch-2
  • 9d7884b don't use .ae method in library code
  • 967de83 Downgrade to ubuntu-20.04 for Py35 and Py36
  • 6425c6a build: strategy: fail-fast: false
  • e2341c7 GitHub Actions: Test on Python 3.11 production release
  • 1258e33 fix failing doctests
  • b7c15d6 include signals documentation; remove duplicate docstrings
  • 1b476ea update doc building instructions
  • 5f57beb Merge pull request #646 from cclauss/patch-1
  • Additional commits viewable in compare view


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