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flatironinstitute / inferelator-prior

Gene regulatory network inference using DNA-binding motifs and chromatin accessibility data.
MIT License
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With thresholding #5

Closed cskokgibbs closed 3 years ago

cskokgibbs commented 3 years ago

Fixed window size parameter to not be a required command line argument for network_from_motifs_fasta. Removed hard-coded threshold for FIMO so that the threshold can be passed as a command line argument.