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flatironinstitute / inferelator

Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
BSD 2-Clause "Simplified" License
47 stars 12 forks source link

Merge dev for v0.3.2 #19

Closed asistradition closed 4 years ago

asistradition commented 4 years ago

Mostly fixes for crossvalidation and multitask

codecov-io commented 4 years ago

Codecov Report

Merging #19 into master will increase coverage by 1.61%. The diff coverage is 93.5%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #19      +/-   ##
==========================================
+ Coverage   90.19%   91.81%   +1.61%     
==========================================
  Files          54       54              
  Lines        5856     6121     +265     
==========================================
+ Hits         5282     5620     +338     
+ Misses        574      501      -73
Impacted Files Coverage Δ
inferelator/crossvalidation_workflow.py 82.97% <100%> (+25.02%) :arrow_up:
inferelator/amusr_workflow.py 90.08% <100%> (+5.68%) :arrow_up:
inferelator/tests/test_workflow_tfa.py 100% <100%> (ø) :arrow_up:
inferelator/tests/test_amusr.py 100% <100%> (ø) :arrow_up:
inferelator/workflow.py 89.07% <78.12%> (-0.84%) :arrow_down:
inferelator/preprocessing/priors.py 95.78% <83.33%> (-3.51%) :arrow_down:
inferelator/tfa_workflow.py 95.89% <87.5%> (+16.18%) :arrow_up:
inferelator/tests/test_crossvalidation_wrapper.py 99.52% <97.05%> (-0.48%) :arrow_down:
... and 4 more

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