bulk RNA-Seq and ATAC-Seq

flatironinstitute / inferelator

Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.

BSD 2-Clause "Simplified" License

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bulk RNA-Seq and ATAC-Seq #69

Open rodongo opened 3 months ago

rodongo commented 3 months ago

Is there a tutorial/example on how to prepare bulk RNA-Seq and ATAC-seq data for use in the inferelator pipeline assuming that one has samples collected under two conditions and would like to perform transcription factor activity analysis.