unable to view spikes in qt-mountainview, ?sumit, mv

[ucnsgy]

Hi, I am having trouble seeing anything but auto-correlograms with qt-mountainview. running qt-mountainview after synthesize_dataset.sh ms4_sort_bash.sh returns the error pasted at the bottom.

it looks like mv.mp mv.mv_compute_templates cannot retrieve from or save data to a temporary directory, which is not consistently called. additionally, qt-mountainview creates an odd directory tree in 001_ms4_bash_example folder beginning with " and matching my temporary directory name.

001_ms4_bash_example ├── " │ └── home │ └── uskhan │ └── anaconda3 │ └── envs │ └── mountainlab │ └── tmp" │ ├── ms.-188107830.140478054631296.476707713.tmp.mv2 │ └── sumit │ └── sha1 │ ├── 96da │ │ └── 96da05e5447a3ca40db2a027a84d96fc540cf69f │ ├── c1fc │ │ └── c1fc30dbcafa36e4fbada2f027498ed820d11759 │ ├── e7e1 │ │ └── e7e18692cefa43f29a7884214ac0308fdefa98dd │ └── ffe1 │ └── ffe170c37783ef2661830cecd9d7d66f5dc9c3af

=========================== from 001_ms4_bash_example qt-mountainview --raw dataset/raw.mda.prv --filt output/filt.mda.prv --pre output/pre.mda.prv --samplerate 30000 --firings output/firings.mda

qt-mountainview ; origin: ; commit: Compiled using Qt version: 5.9.7 (/home/uskhan/anaconda3/envs/mountainlab on host: 'liszt2' Setting up object registry... Parsing command-line parameters... Creating MVContext... Setting up context... Creating prv object for: output/firings.mda Setting up main window... Adding controls to main window... Opening initial views... Starting event loop... [ Getting processor spec... ] [ Checking inputs and substituting prvs ... ] [ Computing process signature ... ] Process signature: 7019555dc662700e326add6a37c473ebf0cdb977 [ Checking outputs... ] {"stdevs_out":"\"/home/uskhan/anaconda3/envs/mountainlab/tmp\"/c3a85fa40a8cb8ca09295f3676bdadc48ea7cdb0_stdevs_out.tmp","templates_out":"\"/home/uskhan/anaconda3/envs/mountainlab/tmp\"/87dc91c702cf9bcd62edcded653abaf618b5caa2_templates_out.tmp"} Processing ouput - "/home/uskhan/anaconda3/envs/mountainlab/tmp"/c3a85fa40a8cb8ca09295f3676bdadc48ea7cdb0_stdevs_out.tmp false {"stdevs_out":"/home/uskhan/anaconda3/envs/mountainlab/mountainsort_examples/bash_examples/001_ms4_bash_example/\"/home/uskhan/anaconda3/envs/mountainlab/tmp\"/c3a85fa40a8cb8ca09295f3676bdadc48ea7cdb0_stdevs_out.tmp","templates_out":"\"/home/uskhan/anaconda3/envs/mountainlab/tmp\"/87dc91c702cf9bcd62edcded653abaf618b5caa2_templates_out.tmp"} Processing ouput - "/home/uskhan/anaconda3/envs/mountainlab/tmp"/87dc91c702cf9bcd62edcded653abaf618b5caa2_templates_out.tmp false {"stdevs_out":"/home/uskhan/anaconda3/envs/mountainlab/mountainsort_examples/bash_examples/001_ms4_bash_example/\"/home/uskhan/anaconda3/envs/mountainlab/tmp\"/c3a85fa40a8cb8ca09295f3676bdadc48ea7cdb0_stdevs_out.tmp","templates_out":"/home/uskhan/anaconda3/envs/mountainlab/mountainsort_examples/bash_examples/001_ms4_bash_example/\"/home/uskhan/anaconda3/envs/mountainlab/tmp\"/87dc91c702cf9bcd62edcded653abaf618b5caa2_templates_out.tmp"}** [ Checking process cache ... ] [ Creating temporary directory ... ] [ Creating links to input files... ] [ Preparing temporary outputs... ] Processing ouput - /home/uskhan/anaconda3/envs/mountainlab/mountainsort_examples/bash_examples/001_ms4_bash_example/"/home/uskhan/anaconda3/envs/mountainlab/tmp"/c3a85fa40a8cb8ca09295f3676bdadc48ea7cdb0_stdevs_out.tmp false Processing ouput - /home/uskhan/anaconda3/envs/mountainlab/mountainsort_examples/bash_examples/001_ms4_bash_example/"/home/uskhan/anaconda3/envs/mountainlab/tmp"/87dc91c702cf9bcd62edcded653abaf618b5caa2_templates_out.tmp false [ Initializing process ... ] [ Running ... ] /home/uskhan/anaconda3/envs/mountainlab/etc/mountainlab/packages/qt-mountainview-0.1.4b1/packages/mv/bin/mv.mp mv.mv_compute_templates --_tempdir="/home/uskhan/anaconda3/envs/mountainlab/tmp"/tempdir_7019555dc6_ww3HCK --firings="/home/uskhan/anaconda3/envs/mountainlab/tmp"/tempdir_7019555dc6_ww3HCK/input_firings_8xmie1Gf.mda --timeseries="/home/uskhan/anaconda3/envs/mountainlab/tmp"/tempdir_7019555dc6_ww3HCK/input_timeseries_iUXBUaRz.mda --stdevs_out="/home/uskhan/anaconda3/envs/mountainlab/tmp"/tempdir_7019555dc6_ww3HCK/output_stdevs_out.tmp --templates_out="/home/uskhan/anaconda3/envs/mountainlab/tmp"/tempdir_7019555dc6_ww3HCK/output_templates_out.tmp --clip_size=100 ":::: Failed to open diskreadmda file: /home/uskhan/anaconda3/envs/mountainlab/tmp/tempdir_7019555dc6_ww3HCK/input_timeseries_iUXBUaRz.mda" "File does not exist: /home/uskhan/anaconda3/envs/mountainlab/tmp/tempdir_7019555dc6_ww3HCK/input_timeseries_iUXBUaRz.mda"**

[ Removing temporary directory ... ] Process returned with non-zero exit code. ":::: Failed to open DiskReadMda32 file: \"/home/uskhan/anaconda3/envs/mountainlab/tmp\"/87dc91c702cf9bcd62edcded653abaf618b5caa2_templates_out.tmp" "File does not exist: \"/home/uskhan/anaconda3/envs/mountainlab/tmp\"/87dc91c702cf9bcd62edcded653abaf618b5caa2_templates_out.tmp" Unable to read chunk of templates in cluster detail view

my mountainlab.env file: ML_TEMPORARY_DIRECTORY: /home/uskhan/anaconda3/envs/mountainlab/tmp ML_PACKAGE_SEARCH_DIRECTORY: [default] ML_ADDITIONAL_PACKAGE_SEARCH_DIRECTORIES: [default] ML_ADDITIONAL_PRV_SEARCH_DIRECTORIES: [default] ML_DATABASE_DIRECTORY: [default]

The following are the values actually being used:

Temporary directory: /home/uskhan/anaconda3/envs/mountainlab/tmp Package search directories: /home/uskhan/anaconda3/envs/mountainlab/etc/mountainlab/packages:/home/uskhan/anaconda3/envs/mountainlab/lib/node_modules/mountainlab/system-packages PRV search directories: /home/uskhan/anaconda3/envs/mountainlab/tmp Database directory: /home/uskhan/anaconda3/envs/mountainlab/etc/mountainlab/database

My set-up is: mountainlab-js running on conda 4.7.12 (Python 3.6.9), qt-mountainview-0.1.4b1 compiled with qt 5.9.7, gcc 7.4.0 on Ubuntu 7.4.0-1ubuntu1~18.04.1. I was getting an identical error with a stock build of qt through conda. the new qt-mountainview build is linked correctly in my mountainlab packages/bin directories and references the correct ML_TEMPORARY_DIRECTORY, in my case /home/uskhan/anaconda3/envs/mountainlab/tmp

any help would be appreciated