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flatironinstitute / mountainsort

Spike sorting software
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Sorting error - SyntaxError: Unexpected token #44

Open vncntprvst opened 6 years ago

vncntprvst commented 6 years ago

Hi, MountainSort works fine on the synthetic data, but I get this error when trying to sort my own data. This seems like a simple error. Thanks.

`mlp-run mountainsort3.mlp sort --raw=raw.mda --geom=geom.csv --firings_out=firings2.mda --_params=params.json --curate=true undefined:1 { ^

SyntaxError: Unexpected token  at Object.parse (native) at Object. (/usr/share/mlpipeline/utils/mlp/mlp-run:33:14) at Module._compile (module.js:410:26) at Object.Module._extensions..js (module.js:417:10) at Module.load (module.js:344:32) at Function.Module._load (module.js:301:12) at Function.Module.runMain (module.js:442:10) at startup (node.js:136:18) at node.js:966:3 `

magland commented 6 years ago

Perhaps there is a problem with your params.json file. Could you attach that file, please?

vncntprvst commented 6 years ago

The .json format is not supported as attachment. Here's the params.json content: 

{
  "samplerate":30000,
  "detect_sign":0,
  "adjacency_radius":0
}
magland commented 6 years ago

It looks fine. Sometimes there are weird invisible characters in text files. Could you try running it without the --_params flag? If that works (i.e., runs) then try to create a completely new .json file and type the text in. J