flatironinstitute / mountainsort5

MountainSort spike sorting algorithm, version 5
Apache License 2.0
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installation error after updating mountainsort5 #24

Open kshtjkumar opened 11 months ago

kshtjkumar commented 11 months ago

hi when i run mountainsort5, i get this error, can someone help ?

Screenshot 2023-12-05 at 9 26 11 PM
magland commented 11 months ago

This means that the output folder created by spikeinterface already exists. You need to delete that folder if you want to run spike sorting again, or choose a different output folder. It's a spikeinterface consideration, not specific to this sorter.

kshtjkumar commented 11 months ago

Hi, once i delete the folder it runs, but re running it throws same error! do i need to keep deleting this folder? is there a better way out ?

magland commented 11 months ago

In SpikeInterface I believe there is a way to specify the output folder when you call run_mountainsort5. You could specify a different folder each time. You should check the docs, but I believe it is

ss.run_mountainsort5(..., output_folder='...')