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flatironinstitute / spikeforest_old

SpikeForest -- spike sorting analysis for website
Apache License 2.0
16 stars 7 forks source link

Wave_clus support for polytrodes #64

Closed ferchaure closed 5 years ago

ferchaure commented 5 years ago

Very impressive project, I will try to help in the wave_clus support. I added the polytrodes function and handle the temporal files in the wave_clus wrapper. Now it should be possible to sort electrodes with a group of nearby channels.

For consistency I removed the polarity flip of the input signal (probably the parameter par.detection has to be change to 'neg' for the tested datasets).

magland commented 5 years ago

Thanks much, this looks great. I am going to do it a bit backwards. I am going to merge your changes, test them, and then port over to spikeinterface/spikesorters. Then we can continue the development over there.

ferchaure commented 4 years ago

Hi any updates about this? In theory now is should be possible to use Wave_clus en recordings with polytrodes (with channel groups containing a low number of channels each).

magland commented 4 years ago

@ferchaure - I'm busy with some other things but will try to follow up next week.

@jamesjun