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flatironinstitute / spikeforest_recordings

Ephys recordings for the SpikeForest project
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Make hybrid-janelia recordings available in kachery cloud #8

Open jsoules opened 2 years ago

jsoules commented 2 years ago

See issue #7 for reference.

jsoules commented 2 years ago

The basic process for this is to run script1.py and script2.py in https://github.com/scratchrealm/prepare-spikeforest-ipfs after modifying the config.yaml YAML file in the same directory. That file identifies each study set, study, and recording (by basename) which should match the entries in https://github.com/flatironinstitute/spikeforest_recordings/tree/master/recordings. Note that when multiple studies are in a study set, the study_set_name key will need to be repeated for each entry.

To run this, you'll need to be in a python environment with both (old) kachery and kachery_cloud installed, with a running kachery daemon. Since the original kachery is not actively supported, probably the easiest way for us to do this is to access the node running on Jeremy's workstation by pointing the KACHERY_DAEMON_HOST to that hostname.

Then just run script1.py and script2.py and record the results. Add them to the spikeforest repo (at present they're being recorded in examples/list_all_recordings.py and examples/list_all_sorting_outputs.py).

jsoules commented 2 years ago

Can be closed after merge of spikeforest repo's PR #21.