I have found a workaround for Eolie and Lollypop but here what is happening. On startup, Lollypop ask Secrets API for two passwords (LAST.FM and LIBRE.FM). Looks like the concurrent lookups do not work for Flatpak (no issue if installed without Flatpak).
Look at this https://gitlab.gnome.org/World/lollypop/-/commit/0695ce5eefcf015741a1e35aab25167c129c13ee
I have found a workaround for Eolie and Lollypop but here what is happening. On startup, Lollypop ask Secrets API for two passwords (LAST.FM and LIBRE.FM). Looks like the concurrent lookups do not work for Flatpak (no issue if installed without Flatpak).
__on_secret_search() is never called. If i disable LIBRE.FM code, then it works (only one call to Secret.password_search())