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flaxsearch / BioSolr

A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"
Apache License 2.0
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pom for xjoin #1

Closed lianyi closed 8 years ago

lianyi commented 8 years ago

Would it possible to have a maven pom, or perhaps something equivalent for building the xjoin code?

I was looking at the code under /sequence and seems missing the dependency from package uk.ac.ebi.webservices.axis1.stubs.fasta, and javax.json.

tomjon commented 8 years ago

Hi, if you want to start using XJoin for your SOLR project then the best way is to download a patch from https://issues.apache.org/jira/browse/SOLR-7341 - if you do, let me know how that goes. What version are you using?

If you really do want the FASTA implementation, too, then that's accessible via the EBI's confluence, or else I can send you the relevant packages.

lianyi commented 8 years ago

Thanks @tomjon ! The patch worked nicely. Not ready to dive into the FASTA implementation yet but I'm thinking it might be very convenient to have a generic factoryClass for xjoin that able to retrieve external UIDs by http request(json/csv/xml).

tomjon commented 8 years ago

Excellent. The FASTA implementation is just for a particular genetic similarity algorithm. Your project sounds interesting..

On 9 November 2015 at 20:14, Lianyi notifications@github.com wrote:

Thanks @tomjon https://github.com/tomjon ! The patch worked nicely. Not ready to dive into the FASTA implementation yet but I'm thinking it might be very convenient to have a generic factoryClass for xjoin that able to retrieve external UIDs by http request(json/csv/xml).

— Reply to this email directly or view it on GitHub https://github.com/flaxsearch/BioSolr/issues/1#issuecomment-155178145.

Tom Winch Flax tomw@flax.co.uk

lianyi commented 8 years ago

Thanks AGN, closing the issue