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flaxsearch / BioSolr

A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"
Apache License 2.0
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empty efu_uri? #8

Open theyaa opened 7 years ago

theyaa commented 7 years ago

If I use a local OWL file, and leave the value for the efu_uri empty. Will the plugin be able to parse the text in the document I send to properly classify the document according to the OWL ontology?

Best.

Theyaa

mattflax commented 7 years ago

No, that is not something this plugin can do. I suggest you look at the Zooma tool, which may be useful to you. See http://www.ebi.ac.uk/spot/zooma/ for more details.

Thanks.

dsmiley commented 7 years ago

Sorry this may be out of scope of this repo/issues here but related to Zooma... is the code behind that available? I was poking around the site but I didn't notice it.

I developed something called the SolrTextTagger which seems to be a little similar and I'm curious about what Zooma is doing internally -- how it works.

tburdett commented 7 years ago

Hi David, yes - the Zooma code is here: https://github.com/EBISPOT/zooma. I'd like to have a look at the SolrTextTagger in a bit more detail but my immediate reaction is that they're solving different problems in a manner that is potentially nicely complementary

dsmiley commented 7 years ago

Thanks. Wow there's a lot of code there; it will take some time to explore to find the parts similar to the SolrTextTagger -- which is scanning text to look for words in a dictionary, in a nutshell. I agree that it's likely complementary.