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flimfit / FLIMfit

State of the art fluorescence lifetime imaging analysis software
http://flimfit.org
GNU General Public License v2.0
23 stars 14 forks source link

Global fitting by columns on segmented images, hung at 65% with an error message #290

Open Powerfultool opened 7 years ago

Powerfultool commented 7 years ago

Was giving responses to the UI happily enough until the global fit was set to 'by columns', then hung after beginning to fit. Text window pasted below

============================================ Starting FLIMfit... DLL execution time: 0.25545 Total execution time: 0.37515 Overall Chi2: 5.16911 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 DLL execution time: 0.10778 Total execution time: 0.1165 Overall Chi2: 17505.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 DLL execution time: 0.11432 Total execution time: 0.12037 Overall Chi2: 17516.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 DLL execution time: 0.11031 Total execution time: 0.11641 Overall Chi2: 1389.96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 DLL execution time: 8.2394 Total execution time: 8.3273 Overall Chi2: 13.7965 21.4296 16.424 27.4179 35.1849 30.686 55.7755 21.3579 53.8908 27.8337 56.3229 48. 5345 28.1746 50.768 40.5344 41.1191 53.9025 46.76 16 25.2386 27.37 36.8413 37.0131 38.1388 28.7589 9.04279 41.2277 5.64769 21.8552 DLL execution time: 14.9537 Total execution time: 15.0607 Overall Chi2: 9.24731 17.9454 6.31082 16.1844 18.6702 1 6.6551 4.10306 13.1299 8.28243 40.4634 23.5971 5.1 1358 10.986 14.8299 16.2815 3.76354 8.87652 6.898 29 13.3805 15.2552 12.0631 3.85707 5.56733 18.7934 11.9705 12.6714 18.8022 35.5924 DLL execution time: 19.85 Total execution time: 19.9701 Overall Chi2: 9.3078 18.1255 6.32522 15.8772 18.4384 16 .3983 4.10099 12.9682 8.3375 40.2801 23.5971 5.06 859 11.324 15.0132 16.3462 3.76958 8.87652 6.957 2 13.672 17.2366 11.8482 3.84029 5.57753 18.7436 12.1128 12.4401 18.7915 35.3833 DLL execution time: 3.5127 Total execution time: 3.5802 Overall Chi2: 737.918 1008.63 1244.12 1160.48 1084.04 9 55.485 1015.27 1295.65 1791.33 2131.77 1795.08 974 .716 1132.63 1170.14 1979.96 896.351 2157.17 1823. 17 1480.12 1012.98 1162.01 703.563 895.004 884.449 1359.72 1564.48 719.831 778.042 DLL execution time: 11.9251 Total execution time: 12.0067 Overall Chi2: 11.7059 11.1776 13.7965 18.6306 9.46233 2 2.2966 12.7652 26.9898 21.6246 19.6336 34.5793 64. 1495 51.5744 40.8128 24.4069 27.7084 39.4878 25.77 15 19.2677 17.834 20.5869 20.8957 15.1448 23.4885 12.79 19.1533 7.32592 5.74405 Warning: File not found or permission denied

In flim_data_series/clear_memory_mapping (line 33) In flim_data_series/delete (line 964) In flim_data_series/clear (line 953) In front_end_menu_controller/menu_file_load_tcspc_callback (line 687) In front_end_menu_controller>@(varargin)obj.menu_file_load_tcspc_callback(vara rgin{:}) In escaped_callback (line 7) In front_end_menu_controller>@(x,y)escaped_callback(x,y,fcn) (line 261) In flim_fit_ui (line 241) In FLIMfit (line 39) DLL execution time: 80.1822 Total execution time: 80.4854 Overall Chi2: 11.2962 8.46247 2.76362 3.32184 10.557 4.8759 14.2528 8.26809 3.9312 11.8766 6.09211 3. 0701 10.1408 24.6459 10.8295 15.6783 5.96828 7.495 16 38.7229 11.2833 10.0947 5.77665 5.64574 11.0616 6.51833 14.4631 12.7347 8.51442 Warning: Error occurred while executing callback: Undefined function or variable 'y_std'.

Error in flim_fit_graph_controller/draw_plot (line 281)

Error in abstract_display_controller/update_display (line 254)

Error in abstract_plot_controller/fit_display_update (line 115)

Error in flim_fit_observer/fit_display_update_evt (line 53)

Error in flim_fit_observer>@(varargin)obj.fit_display_update_evt(varargin{:}) (l ine 40)

Error in flim_fit_controller/filter_table_updated (line 102)

Error in flim_fit_controller>@(varargin)obj.filter_table_updated(varargin{:}) (l ine 385)

In flim_fit_controller/filter_table_updated (line 102) In flim_fit_controller>@(varargin)obj.filter_table_updated(varargin{:}) (line 385) In flim_fit_ui (line 241) In FLIMfit (line 39) Warning: Error occurred while executing callback: Undefined function or variable 'y_std'.

Error in flim_fit_graph_controller/draw_plot (line 281)

Error in abstract_display_controller/update_display (line 254)

Error in abstract_plot_controller/fit_display_update (line 115)

Error in flim_fit_observer/fit_display_update_evt (line 53)

Error in flim_fit_observer>@(varargin)obj.fit_display_update_evt(varargin{:}) (l ine 40)

Error in flim_fit_controller/filter_table_updated (line 102)

Error in flim_fit_controller>@(varargin)obj.filter_table_updated(varargin{:}) (l ine 385)

In flim_fit_controller/filter_table_updated (line 102) In flim_fit_controller>@(varargin)obj.filter_table_updated(varargin{:}) (line 385) In flim_fit_ui (line 241) In FLIMfit (line 39) Warning: Error occurred while executing callback: Undefined function or variable 'y_std'.

Error in flim_fit_graph_controller/draw_plot (line 281)

Error in abstract_display_controller/update_display (line 254)

Error in abstract_plot_controller/fit_display_update (line 115)

Error in flim_fit_observer/fit_display_update_evt (line 53)

Error in flim_fit_observer>@(varargin)obj.fit_display_update_evt(varargin{:}) (l ine 40)

Error in flim_fit_controller/filter_table_updated (line 102)

Error in flim_fit_controller>@(varargin)obj.filter_table_updated(varargin{:}) (l ine 385)

In flim_fit_controller/filter_table_updated (line 102) In flim_fit_controller>@(varargin)obj.filter_table_updated(varargin{:}) (line 385) In flim_fit_ui (line 241) In FLIMfit (line 39) Warning: Error occurred while executing callback: Undefined function or variable 'y_std'.

Error in flim_fit_graph_controller/draw_plot (line 281)

Error in abstract_display_controller/update_display (line 254)

Error in abstract_plot_controller/fit_display_update (line 115)

Error in flim_fit_observer/fit_display_update_evt (line 53)

Error in flim_fit_observer>@(varargin)obj.fit_display_update_evt(varargin{:}) (l ine 40)

Error in flim_fit_controller/filter_table_updated (line 102)

Error in flim_fit_controller>@(varargin)obj.filter_table_updated(varargin{:}) (l ine 385)

In flim_fit_controller/filter_table_updated (line 102) In flim_fit_controller>@(varargin)obj.filter_table_updated(varargin{:}) (line 385) In flim_fit_ui (line 241) In FLIMfit (line 39) Index exceeds matrix dimensions.

Error in segmentation_controller/update_display (line 127)

Error in segmentation_controller/filter_masks (line 371)

Error in segmentation_controller/apply_filtering_pressed (line 243)

Error in segmentation_controller>@(varargin)obj.apply_filtering_pressed(varargin {:}) (line 98)

Error using flim_fit_ui (line 241) Error while evaluating UIControl Callback

DLL execution time: 18.7293 Total execution time: 18.8624 Overall Chi2: 34.1101 16.7972 19.6188 17.7819 15.4261 1 7.3172 13.1224 15.0324 18.5968 11.3559 11.2357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Warning: Error occurred while executing callback: Error using & Matrix dimensions must agree.

Error in flim_fit_platemap_controller/draw_plot (line 121)

Error in abstract_display_controller/update_display (line 254)

Error in abstract_plot_controller/fit_display_update (line 115)

Error in flim_fit_observer/fit_display_update_evt (line 53)

Error in flim_fit_observer>@(varargin)obj.fit_display_update_evt(varargin{:}) (l ine 40)

Error in flim_fit_controller/filter_table_updated (line 102)

Error in flim_fit_controller>@(varargin)obj.filter_table_updated(varargin{:}) (l ine 385)

In flim_fit_controller/filter_table_updated (line 102) In flim_fit_controller>@(varargin)obj.filter_table_updated(varargin{:}) (line 385) In flim_fit_ui (line 241) In FLIMfit (line 39) DLL execution time: 19.4657 Total execution time: 19.5558 Overall Chi2: 33.9539 16.2759 19.3911 17.526 15.4261 1 7.3172 13.1224 15.0162 18.5968 11.3559 11.2357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 DLL execution time: 5.2927 DLL execution time: 7.997 DLL execution time: 4.8669 DLL execution time: 4.5732 DLL execution time: 1.1733 DLL execution time: 0.94441 Total execution time: 24.9691 Overall Chi2: 18.3875 11.8283 12.0105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 DLL execution time: 5.0715 DLL execution time: 7.737 DLL execution time: 4.8199 DLL execution time: 4.4037 DLL execution time: 0.15876 Error while evaluating TimerFcn for timer 'timer-1'

The datatype and size of the value must be defined before the value can be retri eved.