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flimfit / FLIMfit

State of the art fluorescence lifetime imaging analysis software
http://flimfit.org
GNU General Public License v2.0
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Extracting all fit parameters #371

Open iveta-ivanova opened 3 years ago

iveta-ivanova commented 3 years ago

After the fitting procedure, is there any way to extract a list/matrix with the actual estimated parameter values (i.e. all the lifetimes and contributions), so the user can have access to the original fit data to perform their own analysis? Exporting the TIFF files seems to give RGB images.

imunro commented 3 years ago

Aplogies for the slow response. File->Export Fit Resuts Table should do what you want.

iveta-ivanova commented 3 years ago

Thank you for the reply, don't worry! Fit results table is very useful to get all the averages and errors etc of each parameter, I meant of a way to extract for each parameter all of the values within the image, that are obtained in each pixel/binned area in the first instance, before they are averaged out. But don't worry, I'll try to find some way to get them :)

seanwarren commented 3 years ago

Hello, when you export parameter images (not intensity merged) you will get two tiff files, one RGB and one with a _raw.tiff extension. The raw version contains the real floating point parameter (eg tau, I) values which can be loaded by ImageJ, Matlab etc. Let me know if you have any trouble.

thanks, Sean

iveta-ivanova commented 3 years ago

Hello, when you export parameter images (not intensity merged) you will get two tiff files, one RGB and one with a _raw.tiff extension. The raw version contains the real floating point parameter (eg tau, I) values which can be loaded by ImageJ, Matlab etc. Let me know if you have any trouble.

thanks, Sean

Thanks, this is exactly what I need! :) I was extracting the intensity-merged images instead..