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flimfit / FLIMfit

State of the art fluorescence lifetime imaging analysis software
http://flimfit.org
GNU General Public License v2.0
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Running FLIMfit from MATLAB #382

Open fabioformiggini opened 2 years ago

fabioformiggini commented 2 years ago

Hello following "Running FLIMfit from MATLAB" instructions, when I run FLIMfit (Matlab 2021) I get several errors due to impossibility to find (download) the library file. Any way for correcting the error? (I know Matlab so I hoped to be able to give some contribution to the software functions, running FLIMfit from it)

Thanks in advance Best regards Fabio

AndreZeug commented 2 years ago

Hi, as I remember it is a bit tricky to use the correct release. I use Win10 & MATLAB R2021b When moving to the GIT folder (for me) "Z:\GIT\FLIMfit\FLIMfitFrontEnd" I can execute the following line:

hh = FLIMfit;
6.1.0-196-g5e584591
--------------------------
OMERO.matlab Toolbox 
5.3.5-ice36-b73
--------------------------

Can you confirm to use the same release? Happy New Year Andre

fabioformiggini commented 2 years ago

Hello I confirm win10 and Matlab R2021b When I execute FLIMfit I get "Warning: Submodules have not been checked out. Please run "git submodule update --recursive" on the commandline first" Could it be a problem in the zip file I downloaded? Many thanks in advance Best regards Fabio

Il giorno ven 7 gen 2022 alle ore 15:45 AndreZeug @.***> ha scritto:

Hi, as I remember it is a bit tricky to use the correct release. I use Win10 & MATLAB R2021b When moving to the GIT folder (for me) "Z:\GIT\FLIMfit\FLIMfitFrontEnd" I can execute the following line:

hh = FLIMfit; 6.1.0-196-g5e584591

OMERO.matlab Toolbox 5.3.5-ice36-b73

Can you confirm to use the same release? Happy New Year Andre

— Reply to this email directly, view it on GitHub https://github.com/flimfit/FLIMfit/issues/382#issuecomment-1007462141, or unsubscribe https://github.com/notifications/unsubscribe-auth/AXFKXVNDTBITKR5IVXHMKRLUU337DANCNFSM5LJ5HCLA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

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fabioformiggini commented 2 years ago

...Hello I managed to execute FLIMfit (there was a problem in the zip file actually), however at a certain point I got an error. The following are matlab command window messages:

Downloading bioformats... Downloading omero-matlab... Error using loadlibrary There was an error loading the library "FLIMGlobalAnalysis_64" The specified module could not be found.

Error in flim_dll_interface/load_global_library (line 110) [~,warnings] = loadlibrary(obj.lib_name,'FLIMGlobalAnalysis.h','mfilename',proto_file);

Error in flim_dll_interface (line 148) obj.load_global_library();

Error in flim_fit_controller (line 126) obj.dll_interface = flim_dll_interface();

Error in flim_fit_ui (line 141) handles.fit_controller = flim_fit_controller(handles);

Error in FLIMfit (line 39) ui = flim_fit_ui(false);

Caused by: Error using loaddefinedlibrary The specified module could not be found.

regards Fabio

Il giorno mar 11 gen 2022 alle ore 12:03 Fabio F @.***> ha scritto:

Hello I confirm win10 and Matlab R2021b When I execute FLIMfit I get "Warning: Submodules have not been checked out. Please run "git submodule update --recursive" on the commandline first" Could it be a problem in the zip file I downloaded? Many thanks in advance Best regards Fabio

Il giorno ven 7 gen 2022 alle ore 15:45 AndreZeug < @.***> ha scritto:

Hi, as I remember it is a bit tricky to use the correct release. I use Win10 & MATLAB R2021b When moving to the GIT folder (for me) "Z:\GIT\FLIMfit\FLIMfitFrontEnd" I can execute the following line:

hh = FLIMfit; 6.1.0-196-g5e584591

OMERO.matlab Toolbox 5.3.5-ice36-b73

Can you confirm to use the same release? Happy New Year Andre

— Reply to this email directly, view it on GitHub https://github.com/flimfit/FLIMfit/issues/382#issuecomment-1007462141, or unsubscribe https://github.com/notifications/unsubscribe-auth/AXFKXVNDTBITKR5IVXHMKRLUU337DANCNFSM5LJ5HCLA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

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fabioformiggini commented 2 years ago

Hello I tried again and I get The server returned the status 404 with message "Not Found" in response to the request to URL https://storage.googleapis.com/flimfit-downloads/latest/5.1.1-63-g32ca5d51/libraries/flimfit_libraries_pcwin64_5.1.1-63-g32ca5d51.zip I'm afraid the library (5.1.1-63-g32ca5d51.zip) is old and does not exist anymore. Maybe, the new one should be: 6.1.0-196-g5e584591 ? Could you tell me the right URL to download it? Many thanks in advance Best regards Fabio

AndreZeug commented 2 years ago

Dear Fabio, I am affraid you do not use the latest FLIMfit version from the git. My Version is 6.1.0-196-g5e584591. The download for the library is then https://storage.googleapis.com/flimfit-downloads/latest/6.1.0-196-g5e584591/flimfit_libraries_pcwin64_6.1.0-196-g5e584591.zip

I know from previous tests that the libraries are very specific for the versions. I think in your case the key is to get the latest release, but not the old version 5.1. image

Unfortunately Sean stopped working in the field, so do not expect too much support. Contrary I would be happy if we could proceed to develope FLIMfit. In case you are interested, please contact me directly.

fabioformiggini commented 2 years ago

Many thanks Andre!! now the program runs.

fabioformiggini commented 2 years ago

Ciao Andre, thanks for the help. Now program runs. Could you give me an email address? best regards Fabio

Il sab 22 gen 2022, 13:19 AndreZeug @.***> ha scritto:

Dear Fabio, I am affraid you do not use the latest FLIMfit version from the git. My Version is 6.1.0-196-g5e584591. The download for the library is then

https://storage.googleapis.com/flimfit-downloads/latest/6.1.0-196-g5e584591/flimfit_libraries_pcwin64_6.1.0-196-g5e584591.zip

I know from previous tests that the libraries are very specific for the versions. I think in your case the key is to get the latest release, but not the old version 5.1.

Unfortunately Sean stopped working in the field, so do not expect too much support. Contrary I would be happy if we could proceed to develope FLIMfit. In case you are interested, please contact me directly.

— Reply to this email directly, view it on GitHub https://github.com/flimfit/FLIMfit/issues/382#issuecomment-1019227294, or unsubscribe https://github.com/notifications/unsubscribe-auth/AXFKXVK55HZ6BWKBHE6U3JDUXKOFZANCNFSM5LJ5HCLA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

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