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flintproject / Flint

A simulator for biological and physiological models
https://flintsimulator.org
MIT License
6 stars 3 forks source link

Flint 2.1 package for macOS installs broken binary #6

Closed tabe closed 5 years ago

tabe commented 5 years ago

The installed binary fails to launch with the following error:

Process: flint [27882] Path: /Applications/Flint.app/Contents/MacOS/flint Identifier: jp.physiome.flint Version: 2.1.0 (2.1.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: flint [27882] User ID: 504

Date/Time: 2019-02-01 17:42:03.855 +0900 OS Version: Mac OS X 10.12.6 (16G1510) Report Version: 12 Anonymous UUID: BC62780F-AD78-90AB-749C-FED6EBE2C461

Time Awake Since Boot: 6400000 seconds

System Integrity Protection: enabled

Crashed Thread: 0

Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY

Termination Reason: DYLD, [0x1] Library missing

Application Specific Information: dyld: launch, loading dependent libraries

Dyld Error Message: Library not loaded: /opt/local/lib/libuuid.16.dylib Referenced from: /Applications/Flint.app/Contents/MacOS/flint Reason: image not found

Binary Images: 0x10a4af000 - 0x10a5feff7 +jp.physiome.flint (2.1.0 - 2.1.0) /Applications/Flint.app/Contents/MacOS/flint 0x10a730000 - 0x10acdcff7 +libflintxx.0.dylib (0) <82D39042-F5D0-3143-BFF8-6EAA33228FF8> /Applications/Flint.app/Contents/Frameworks/libflintxx.0.dylib 0x10ba58000 - 0x10ba59ff3 +libflint.0.dylib (0) /Applications/Flint.app/Contents/Frameworks/libflint.0.dylib 0x10ba62000 - 0x10ba94ffb +libODES.0.dylib (0) <65424862-5DA3-3B40-9505-E39277E4F059> /Applications/Flint.app/Contents/Frameworks/libODES.0.dylib 0x10baa6000 - 0x10c0bafff +libsbml.5.17.0.dylib (0) /Applications/Flint.app/Contents/Frameworks/libsbml.5.17.0.dylib 0x10c276000 - 0x10c2b1fff +libsundials_arkode.1.dylib (0) <02103D80-2F0E-3188-91F1-8CCF279C6983> /Applications/Flint.app/Contents/Frameworks/libsundials_arkode.1.dylib 0x10c2bf000 - 0x10c2e1ffb +libsundials_cvode.2.dylib (0) <5414D37F-C785-3817-AE77-4D6A383FB3EF> /Applications/Flint.app/Contents/Frameworks/libsundials_cvode.2.dylib 0x10c2eb000 - 0x10c329fff +libsundials_cvodes.2.dylib (0) <480C892D-2890-3BA1-9C9F-D92A683578B3> /Applications/Flint.app/Contents/Frameworks/libsundials_cvodes.2.dylib 0x10c337000 - 0x10c358ff3 +libsundials_ida.2.dylib (0) /Applications/Flint.app/Contents/Frameworks/libsundials_ida.2.dylib 0x10c35f000 - 0x10c37bff7 +libsundials_kinsol.2.dylib (0) <88F135D0-676F-34C2-BE3E-B6641536971C> /Applications/Flint.app/Contents/Frameworks/libsundials_kinsol.2.dylib 0x10c382000 - 0x10c385fff +libsundials_nvecserial.2.dylib (0) /Applications/Flint.app/Contents/Frameworks/libsundials_nvecserial.2.dylib 0x10c38f000 - 0x10c39fffb +libsedml.0.dylib (0) <9A54CC57-09DC-38BE-B8D7-0DA007945504> /Applications/Flint.app/Contents/Frameworks/libsedml.0.dylib 0x10c3a4000 - 0x10c41effb +libczmq.4.dylib (0) /Applications/Flint.app/Contents/Frameworks/libczmq.4.dylib 0x1112c0000 - 0x1112fddc7 dyld (433.5) <322C06B7-8878-311D-888C-C8FD2CA96FF3> /usr/lib/dyld

Model: MacPro6,1, BootROM MP61.0124.B00, 8 processors, 8-Core Intel Xeon E5, 3 GHz, 64 GB, SMC 2.20f18 Graphics: AMD FirePro D500, AMD FirePro D500, PCIe, 3072 MB Graphics: AMD FirePro D500, AMD FirePro D500, PCIe, 3072 MB Memory Module: DIMM1, 16 GB, DDR3 ECC, 1866 MHz, 0x80AD, 0x484D54343247523742465234432D52442020 Memory Module: DIMM2, 16 GB, DDR3 ECC, 1866 MHz, 0x80AD, 0x484D54343247523742465234432D52442020 Memory Module: DIMM3, 16 GB, DDR3 ECC, 1866 MHz, 0x80AD, 0x484D54343247523742465234432D52442020 Memory Module: DIMM4, 16 GB, DDR3 ECC, 1866 MHz, 0x80AD, 0x484D54343247523742465234432D52442020 AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x135), Broadcom BCM43xx 1.0 (7.21.171.133.1a2) Bluetooth: Version 5.0.5f3, 3 services, 27 devices, 1 incoming serial ports Network Service: Ethernet 1, Ethernet, en0 PCI Card: AMD FirePro D500, Display Controller, Slot-1 PCI Card: AMD FirePro D500, Display Controller, Slot-2 PCI Card: pci1b4b,9220, AHCI Controller, Thunderbolt@236,0,0 Serial ATA Device: APPLE SSD SM0512G, 500.28 GB Serial ATA Device: LaCie 2big v2 THB USB3 Raid 1, 4 TB Serial ATA Device: MARVELL VIRTUAL USB Device: USB 2.0 Bus USB Device: Hub USB Device: BRCM20702 Hub USB Device: Bluetooth USB Host Controller USB Device: USB 3.0 Bus USB Device: Hub USB Device: USB Keyboard Thunderbolt Bus: Mac Pro, Apple Inc., 19.2 Thunderbolt Bus: Mac Pro, Apple Inc., 19.2 Thunderbolt Bus: Mac Pro, Apple Inc., 19.2 Thunderbolt Device: 2big TBT2 USB3, LaCie, 1, 22.1

tabe commented 5 years ago

Fixed with commit d0b31be2fbda9f9bc6c88a2702528ce44f6040d1.