Is there a way to directly access or export the plot returned by plotResiduals()?

[smsfrn]

I'm likely missing something obvious, but the plot itself doesn't appear to be a component in the returned object, so I'm having trouble accessing it to save programmatically. Any ideas?

[smsfrn]

This works for saving one-off plots, but I'm still hoping to access the plot directly from the plotResiduals() object to support more complex workflows (i.e. looping through multiple predictors, saving the residual plot for each in a list, and generating a gridded figure with all the plots).

library(tidyverse)
library(lme4)
library(DHARMa)
library(here)

dat <- iris %>%
  mutate(Petal.Length_factor = ifelse(Petal.Length < 4.2, "A", "B"))

mod <- lme4::lmer(Sepal.Width ~ Species + Petal.Width + (1 | Petal.Length_factor),
                  data = dat)

simulationOutput <- simulateResiduals(fittedModel = mod)

var <- "Petal.Width"

output_path <- here(paste0("residual_plot_", var, ".png"))

png(output_path)
plotResiduals(simulationOutput, dat %>% pull(var))
dev.off()

[florianhartig]

Hello Sam,

can you give me an example of another plotting function where this works?

Note that DHARMa is using base R and and not ggplot for plotting

Best, F

[smsfrn]

Oops, nope. I misremembered what could be done with base graphics. I'll close this!