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flow-r / ultraseq

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Support for multiple samples (bam_mutect) #1

Open sahilseth opened 8 years ago

sahilseth commented 8 years ago

Current version looks like:

flowr run x=bam_mutect tumor_bam=tumor.bam normal_bam=normal.bam tumor_name=TCGA-00-ABCD-01 normal_name=TCGA-00-ABCD-10 out_prefix=tumor_normal platform=local execute=FALSE

We would like a version, which supports multiple samples as well.

flowr run x=bam_mutect paired_sample_sheet=<sheet.df>
sahilseth commented 8 years ago

this issue refers to https://github.com/flow-r/ultraseq/blob/master/pipelines/bam_mutect.R