Add test infrastructure/tests for command line utilities

fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

Other

9 stars 7 forks source link

Add test infrastructure/tests for command line utilities #45

Open pjbriggs opened 8 years ago

pjbriggs commented 8 years ago

It would be useful to have some small tests for various command line utilities:

analyse_barcodes.py
barcode_splitter.py
manage_fastqs.py
Various functions of auto_process.py (e.g. setup, clone etc)

This requires one or more small test datasets, plus the addition of a test framework (could be based on shell scripts for the time being).

pjbriggs commented 6 years ago

Unit tests have been introduced for some autoprocess functions in PRs #127 (publish_qc) and #130 (make_fastqs). Some tests already exist for setup, merge_fastqs and import_project.